KEGG   Solanum lycopersicum (tomato): 101256818
Entry
101256818         CDS       T02665                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101256818
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101256818
Enzymes [BR:sly01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     101256818
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101256818
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     101256818
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 PDE12-like_N
Other DBs
NCBI-GeneID: 101256818
NCBI-ProteinID: XP_010312071
UniProt: A0A3Q7IJW4
Position
10:complement(60716275..60725788)
AA seq 605 aa
MLSVLRVHLPSDIPIVGCELTPYVLLRRPNKDKSVISEDVSESAPIDGYFLRYKWYRIQS
DKKVAICSIHPSEQATLQCLGCVKAKIPVSKSYHCSPKCFSDAWQHHRVLHERAASAVNE
NGNGEEEIFGQFNSTGSGVSNASLASSQSSGSLANGNAPLYPAAITQRNGGETWFEVGRS
KTYTPTADDIGHALKFECVVVDAETKLPVGPSSTILTSRVIPAPCPTPRRMFSVSGVDIP
GHLDLDGRLSSSGTFTVLSYNILSDAYATNELYSYCPSWALSWAYRRQNLLREIVGYRAD
IVCLQEVQSNHFEEFFAPELDKHGYQALFKRKTAEVFSGSINNIDGCATFFRRDRFSHVK
KYEVEFNKAAQSLTDAVVPIAQKKTALNRLVKDNVALIVVLEAKFSNQGVDNPGKRQLVC
VANTHVNVQQELRDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSMPGSAPHTLLALGK
VDPMHQDLVVDPLGILRPASKLTHQLPLVSAYSSFARMGVGLGLEQQRRRMDPNTNEPLF
TNCTRDFIGTHDYIFYSADSLTVESLLELLEEESLRKDTALPSPEWSSDHIALLAEFRCK
PRTRR
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgctgagtgtgttacgagtgcatctcccctccgatataccgatcgtaggctgtgaactc
acgccttatgtcctcttacgacggccgaacaaggacaagtctgttatttctgaggatgtt
tcagagtctgcaccgattgatggatatttcttgagatacaagtggtatcgtatacaaagt
gataaaaaagttgccatctgtagtatccatccatctgagcaagctacattgcagtgcctt
gggtgtgtgaaggccaaaatcccagtctctaagagttaccattgctcacctaaatgcttc
tcagatgcatggcaacatcatcgtgttctgcatgaacgtgccgctagtgctgtaaatgaa
aatggaaacggggaggaagaaatatttgggcaatttaatagtaccgggtctggtgtttct
aatgcaagtttggcttcttctcaatcaagtggcagcttggcgaatggaaacgcaccgtta
tatcctgcagcaataacccagagaaatggcggtgaaacctggtttgaagttggacggtct
aaaacatatacgcctactgcagatgatattggtcacgcgcttaaattcgaatgtgttgtt
gtagatgcagaaacaaaattacctgttgggccttctagtaccatattgacgtcccgagtg
attccagctccatgtccaactccacgtcgcatgttttcagttagcggagttgatattcct
ggtcatctggatttggatggtcgattatcatcttcaggaactttcactgtgctctcctac
aatattctgtctgatgcctatgctacaaacgaattatacagttattgcccctcttgggct
ctttcttgggcatatcgtagacagaatcttttgcgcgaaatagttggctaccgtgcagac
attgtttgtcttcaagaggttcaaagtaatcattttgaggaattctttgcccctgagctg
gataaacatggttatcaagctctgttcaaaagaaaaacagccgaggtgtttagtgggagt
atcaacaatattgatggctgtgctacatttttccgccgagatagattctcacatgttaaa
aaatatgaggttgagtttaataaagctgcacaatctttgactgatgctgtggttcccatt
gcccaaaagaagactgcattaaatcgtttggttaaggataatgttgcacttatagtggtt
ttggaagcgaagttcagcaaccagggggttgacaaccctgggaagcgtcaactagtttgt
gtggccaacacacatgtaaacgttcagcaagaattaagggatgtcaaactgtggcaggtt
cacacacttcttaaaggacttgaaaaaatcgctgccagtgccgacatcccaatgctggtc
tgtggagattttaattcgatgcccggaagtgctcctcatacacttcttgccttggggaaa
gttgatccaatgcatcaagatctagtagtggatcctcttggtattttgcgtccagcttca
aagttaacacaccagctcccattggttagtgcttattcatcctttgccagaatgggggtg
ggacttggactagagcagcaaaggagaaggatggatcctaataccaatgagcccttgttt
accaactgcaccagagattttattggcactcatgattatatattctactcagctgattca
ttaactgttgaatctttattggagctcttggaagaagaaagcttgagaaaggacacagca
cttccttctccagagtggtcgtctgatcatatagcactcttagctgagttccggtgcaag
ccgagaactagacgctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (38)   

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