KEGG   Solanum lycopersicum (tomato): 101264016
Entry
101264016         CDS       T02665                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03020  RNA polymerase
sly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101264016
  09124 Replication and repair
   03420 Nucleotide excision repair
    101264016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sly03021]
    101264016
   03400 DNA repair and recombination proteins [BR:sly03400]
    101264016
Transcription machinery [BR:sly03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     101264016
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      101264016
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 101264016
NCBI-ProteinID: XP_004241362
UniProt: A0A3Q7HVT2
Position
6:complement(45754344..45757180)
AA seq 138 aa
MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQ
YVKRFSRYKNPDAVRQAREILSRYPLAEFELCVLGNLCPETVEEGIAMVPSIKNRGRALD
EEAIEKMLTDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggggaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaag
gccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatc
cagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaa
tatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaatt
cttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaa
actgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgac
gaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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