KEGG   Solanum lycopersicum (tomato): 101265551
Entry
101265551         CDS       T02665                                 
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36 isoform X1
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    101265551
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:sly01002]
    101265551
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sly04121]
    101265551
   03036 Chromosome and associated proteins [BR:sly03036]
    101265551
   03400 DNA repair and recombination proteins [BR:sly03400]
    101265551
Peptidases and inhibitors [BR:sly01002]
 Metallo peptidases
  Family M67
   101265551
Ubiquitin system [BR:sly04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    101265551
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    101265551
   BRISC complex
    101265551
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     101265551
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     101265551
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172
Other DBs
NCBI-GeneID: 101265551
NCBI-ProteinID: XP_004241704
Position
6:complement(42254272..42262946)
AA seq 420 aa
MALTSVKMTEEVWLTCLSHALSTETEEIMGLLLGDTQQSKNGSVTALIWGALPQPRCDRR
KDRVETNPEQLTAASVKAERMTLATGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
AGFIGLIFSCFSEDAQKVGRIQVIAFQSLDGKQQNHMLLRPISLSPVHKNSVIDLESSLS
SADTSRAGSKIEILEQDTGDSRAAAIASKGGSRSTDLGNFFANVDNRVGENLYANSLSNA
VIDVDPMDMSESMQEAMHRSNLEMSGAEYVRKEIPLLVLPSSSIFNLDAPLNSFTDLQRV
LFEEERTAYNQAVVTNMRETKVHPLTFIHHTSTYQASMCKLMEYCLSPAISALQDQLREN
EVRLKMLSEEAKVLETEIIRGEPNTSSPRRGSASLGQRDLYSPTELRSVSGSSSRSRKAS
NT seq 1263 nt   +upstreamnt  +downstreamnt
atggctctaacgagtgtgaaaatgacggaggaagtgtggttaacatgtcttagtcatgca
ttgtctacagaaactgaagagataatgggacttctcctcggtgatactcagcagtcaaaa
aatggtagcgtgactgcacttatatggggagcactgccacagccacgttgtgacaggagg
aaagatcgtgttgagaccaatcctgagcagctaactgctgcatcagtcaaggctgagaga
atgaccctggcaacaggaagaacaacaagagtgattggctggtaccattcacatccccac
attacagtgctcccttcccatgttgatgtccgcactcaagccatgtatcaacttctggat
gctgggtttattgggttgatattttcatgttttagtgaagatgcacagaaggtcgggaga
atccaagttattgcatttcagtccttggatggaaagcagcagaatcacatgttgttgagg
cctatttccctttcccctgtacataaaaattctgtaatagaccttgaatcgtctttaagt
tccgcagacacatctagagctggttcaaaaattgagattcttgaacaagatactggtgat
tcaagagctgctgctatagcttccaagggtgggtcaagatcgacggacttgggcaatttc
tttgctaatgttgataatagagttggagaaaacctttacgccaacagtcttagtaatgcc
gtcattgatgtagatccaatggacatgtcagaaagtatgcaggaagcaatgcatcgatcg
aatctggagatgagtggtgcagaatatgtcagaaaggaaatccctcttcttgttctgcca
tcctcatctattttcaatcttgatgcacctttgaactcattcacggatctgcaacgggta
ttatttgaagaagaacgaactgcatataatcaggctgttgtaacaaatatgagagaaaca
aaagtgcacccgctcactttcatccaccacacatctacatatcaggcttctatgtgcaaa
ttaatggagtattgcttaagtcccgccatcagtgccctccaggaccagttaagagagaat
gaagttcggctaaagatgctaagtgaagaagccaaagttttggaaactgagattataaga
ggggaaccaaatacaagttctcctcgtcgaggtagtgcttcattgggtcaaagagacttg
tacagtccaaccgagttaagaagtgtttccggttcaagtagccggagcagaaaagcatcc
taa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

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