KEGG   Streptomyces avermitilis: SAVERM_3892
Entry
SAVERM_3892       CDS       T00126                                 
Name
(GenBank) putative 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
sma  Streptomyces avermitilis
Brite
KEGG Orthology (KO) [BR:sma00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sma03016]
    SAVERM_3892
Enzymes [BR:sma01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     SAVERM_3892
Transfer RNA biogenesis [BR:sma03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    SAVERM_3892
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: BAC71604
NITE: SAV3892
UniProt: Q82GK5
Position
complement(4808237..4808809)
AA seq 190 aa
MRLFAAVLPPDDVVRELASAVDELHRLPGADGLRWTGRPGWHFTLAFYGEVDDELVPELS
VRLERAARRTAPFPLAVRGGGQFGHGRALWAGAEGDLGTLRLLAERAEAAAGRAGVPMGE
HRRYRPHLTVARSRDAVDARPYVEALDTFASRTWTVGELCLVRSRLPKSGVPGEQPRYET
VAGWPLGAGA
NT seq 573 nt   +upstreamnt  +downstreamnt
atgagactcttcgccgcggtgctgccacccgatgacgtggtccgggaactcgcctctgcc
gtcgacgagttgcaccggctgccgggagcggacgggctgcgctggacgggccgccccggc
tggcacttcacgctcgccttctacggagaggtcgacgacgaactcgtaccggagctctcg
gtacggctggagcgcgccgcccggcggaccgcgccctttccgctggcggtgcggggcgga
ggacagttcggccatgggcgggcgctgtgggcgggcgcggagggcgacctgggcaccctg
cggctgctggccgagcgggcggaggcggcggccgggagggcgggcgtgccgatgggggag
caccgccgctaccgcccgcatctgacggtggcgcgcagccgcgacgcggtcgacgcgcgg
ccctacgtcgaggccctcgacaccttcgcgagccgcacgtggacggtgggcgagctgtgt
ctcgtacgcagccggctgccgaagtcgggggtgccgggtgagcagccccggtacgagacg
gtcgccggatggccgctcggggcgggcgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system