KEGG   Streptomyces avermitilis: SAVERM_3912
Entry
SAVERM_3912       CDS       T00126                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
sma  Streptomyces avermitilis
Pathway
sma03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    SAVERM_3912
  09124 Replication and repair
   03420 Nucleotide excision repair
    SAVERM_3912
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sma03021]
    SAVERM_3912
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_3912
Enzymes [BR:sma01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SAVERM_3912
Transcription machinery [BR:sma03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     SAVERM_3912
DNA repair and recombination proteins [BR:sma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     SAVERM_3912
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom IMD ETAA1
Other DBs
NCBI-ProteinID: BAC71624
NITE: SAV3912
UniProt: Q82GI5
Position
4832156..4833799
AA seq 547 aa
MNGPLIVQSDKTLLLEVDHEQANECRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGH
DAEQVVDALVQYSRYPVPHALLVDIAETMDRYGRLTLSKHPAHGLVLTTTDRPVLEEILR
SKRVAPLVGARLDPDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHPIELAEDGWA
LRPYQKQAVENFWHGGSGVVVLPCGAGKTLVGAGSMAQAKATTLILVTNTVSARQWKHEL
VKRTSLTEDEIGEYSGTKKEIRPVTIATYQVLTTRRKGVYPHLELFDSRDWGLIVYDEVH
LLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPA
DCVEVRVNLTETERLAYATAETEEKYRFCATTATKRKVTEALVRKFAGQQILVIGQYIDQ
LDELGEHLNAPVIKGETSNAQREKLFDAFREGEISVLVVSKVANFSIDLPEATVAIQVSG
TFGSRQEEAQRLGRVLRPKADGHQAHFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIMDA
DELLTES
NT seq 1644 nt   +upstreamnt  +downstreamnt
gtgaatggtccactcatcgtccagagcgacaagacactcctgctcgaagtcgaccacgag
caggcgaacgagtgccgacgggccatcgcgccgttcgccgagctggagcgggcgcccgag
cacatccacacctaccgggtgaccccgctcgggctgtggaacgcgcgggccgccgggcac
gacgccgagcaggtcgtggacgcgctcgtgcagtacagccggtaccccgtgccgcatgcc
ctgctcgtggacatcgccgagacgatggaccgctacgggcggctgacgctctccaagcac
ccggcccacgggctggtgctcacgacgacggaccggcccgtgctcgaggagatcctccgg
tccaagcgggtcgccccgctcgtcggcgcccgcctcgaccccgacaccgtcgccgtgcac
ccctccgagcgcgggcagatcaagcagacgctgctgaagctgggctggcccgccgaggac
ctcgccggttacgtcgacggggaggcgcacccgatcgagctggccgaggacggctgggcg
ctgcggccgtaccagaagcaggccgtggagaacttctggcacggcggctccggcgtggtc
gtgctgccctgtggcgcgggcaagacgctcgtcggtgccgggtccatggcgcaggccaag
gccaccacgctcatcctcgtcaccaacaccgtctccgcccgccagtggaagcacgagctg
gtgaagcggacgagtctcaccgaggacgagatcggtgagtacagcggtacgaagaaggag
atccggccggtcaccatcgccacgtaccaggtgctgacgaccaggcggaagggcgtctac
ccgcacctggagctgttcgactcccgtgactggggactcatcgtctacgacgaggtgcat
ctgctgccggcgcccgtcttcaagttcaccgccgatctccaggcgcggcggcggctgggg
ctgacggcgaccctcgtgcgggaggacgggcgcgagtcggacgtcttctcgctcatcggg
cccaagcggttcgacgctccgtggaaggagatcgaggcgcaggggtacatcgcgcccgcc
gactgcgtggaggtgcgggtcaatctgacggagaccgagcggctcgcgtacgcgaccgcc
gagaccgaggagaagtatcgcttctgcgccaccacggcgacgaagcggaaggtgacggag
gcgctggtccggaagttcgccgggcagcagatcctcgtcatcggccagtacatcgaccag
ctcgacgagctgggcgagcacctgaacgcgcccgtcatcaagggcgagaccagcaacgcg
cagcgcgagaagctcttcgacgccttccgggagggcgagatcagcgtcctcgtcgtctcc
aaggtcgcgaacttctccatcgacctgccggaggcgaccgtcgccatccaggtgtcgggc
acgttcggctcgcgccaggaggaggcgcagcggctgggccgcgtcctgcggcccaaggcg
gacggccaccaggcccacttctactcggtcgtcgcccgcgacaccatcgaccaggacttc
gccgcgcaccgccagcgcttcctggcggagcagggctacgcctaccggatcatggacgcg
gacgagctcctgacggagagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system