KEGG T00126: SAVERM

Streptomyces avermitilis: SAVERM_4319

Entry

SAVERM_4319 CDS T00126

Gene name

recF

Definition

(GenBank) putative DNA recombination and repair protein

K03629

DNA replication and repair protein RecF

Organism

sma Streptomyces avermitilis

Pathway

sma03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:sma00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SAVERM_4319 (recF)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_4319 (recF)
DNA repair and recombination proteins [BR:sma03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     SAVERM_4319 (recF)

SSDB

Motif

Pfam:

SMC_N AAA_23 AAA_15 AAA_21 AAA_29 AAA_33 SbcCD_C ABC_tran

Other DBs

NCBI-ProteinID:

BAC72031

NITE:

SAV4319

UniProt:

Q82FD5

Position

5291312..5292433

AA seq 373 aa
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL
VRMGAERAIIRAQVRQDERRQLVELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPE
DLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKTAALARRHGGRSMD
LSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGPIALEYKPSAPGEAH
TRDALYEQLMAALAEARKQEIERGVTLVGPQRDELLLKLGQLPAKGYASHGESWSYALAL
RLASYDLLRAEGNEPVLVLDDVFAELDTRRRERLAELVAPGEQVLVTAAVDDDVPGVLAG
TRYTVSEGTVERV

NT seq 1122 nt +upstreamnt +downstreamnt
atgcacgtcacgcatctgtcgctggccgacttccgctcgtacgcccgggtcgaggtcccg
ctcgacccgggcgtcaccgccttcgtgggacccaacgggcagggcaagacgaacctcgtc
gaggcggtcggctatctcgccaccctcggcagccaccgggtctcgtccgacgcgcccctg
gtccgcatgggcgccgaacgcgcgatcatccgggcccaggtccggcaggacgagcgccgg
cagctcgtcgagctggagctgaacccgggcaaggccaatcgcgctcgcatcaacaggtcc
tcgcaggtcagaccccgtgacgtgctgggcatcgtacgtactgtcctgttcgccccggag
gacctcgcgctgatcaagggcgaccccggggagcggcgccgtttcctcgacgagctgatc
accgcccgctccccgcgcatggccggcgtccgttccgactacgagcgggtcctcaagcag
cgcaacaccctcctcaagacggccgcgctggcccgccggcacggcggccgttccatggat
ctgtccaccctcgacgtgtgggaccagcacctcgcccgcgccggcgccgaactgctcgcc
cagcgcctggacctgatcgccgcgctccagccgctcgccgacaaggcgtacgaacagctg
gcacccggcggcggcccgatcgccctggagtacaagccgtccgccccgggtgaggcccac
acgcgggacgccctctacgagcagttgatggccgcgctcgccgaggcccgcaagcaggag
atcgagaggggcgtcaccctggtgggtccccaacgtgacgaacttctcctcaagctcggc
cagcttccggcaaagggatacgcgtcacacggcgagtcctggtcgtacgcgctggcgctg
cgcctggcgtcgtacgacctcctgcgcgccgaggggaacgagccggtgctcgtcctcgac
gacgtcttcgccgagctggacacccgcagaagagagcgcctcgcggaactcgtcgccccg
ggagagcaggtgctggtgaccgccgcggtcgacgacgacgtgccgggggtcctggcggga
acgcggtacaccgtgtccgaggggaccgtggagcgcgtatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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