KEGG   Streptomyces avermitilis: SAVERM_4623Help
Entry
SAVERM_4623       CDS       T00126                                 

Gene name
holB
Definition
(GenBank) putative DNA polymerase III delta prime subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
sma  Streptomyces avermitilis
Pathway
sma03030  DNA replication
sma03430  Mismatch repair
sma03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SAVERM_4623 (holB)
   03430 Mismatch repair
    SAVERM_4623 (holB)
   03440 Homologous recombination
    SAVERM_4623 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sma03032]
    SAVERM_4623 (holB)
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_4623 (holB)
Enzymes [BR:sma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SAVERM_4623 (holB)
DNA replication proteins [BR:sma03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SAVERM_4623 (holB)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SAVERM_4623 (holB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_pol3_delta2 AAA DNApol3-delta_C AAA_22 RuvB_N Mg_chelatase AAA_5 AAA_16
Motif
Other DBs
NCBI-ProteinID: BAC72335
NITE: SAV4623
UniProt: Q82EJ2
Position
5647265..5648470
Genome map
AA seq 401 aa AA seqDB search
MPVWDDLVGQEKLSEQLAAAARDADALVTAATAGTPPPEASKMTHAWLFTGPPGAGRTTA
ARAFAAALQCVSPDRALGGIPGCGFCDGCHTALLGTHADVSTVAAVGTQILADDMRDTVR
KSFTSPANGRWQVILVEDAERLNEKSANAVLKAVEEPAPRTVWLLCAPSVEDVLPTIRSR
CRHLNLLTPSVDAVADMLVRRDGIEPEAAYAAARATQGHVDRARRLATDPRARERRAAVL
KMPLRVEDIGGCLKAAQELVDAATADSKQLAEEVDVKETEEMRAALGGAQGGRMPRGTAG
VMKDLEDKQKRRRTRTQRDSLDLALTELTGFYRDVLALQLGSRLALANTDAEDALERLAR
GSSPEATLRRIDAIAACRDALDRNVAPLLAVEAMTMALRAG
NT seq 1206 nt NT seq  +upstreamnt  +downstreamnt
atgcccgtgtgggacgacctggtgggccaggagaagctgagcgagcagctcgccgcggct
gcccgtgacgccgacgccctggtcaccgcggccaccgccggcactccgccgcccgaggcg
tcgaagatgacgcacgcctggctgttcacgggcccgcccggcgcgggccgcaccacggcc
gcgcgtgccttcgccgcggcgctccagtgcgtgagccccgaccgcgcgctgggcggcatc
cccggctgcggcttctgcgacggctgccatacggccctgctcggcacccacgccgacgtc
agcacggtcgccgccgtgggcacgcagatcctcgccgacgacatgcgggacaccgtgcgc
aagtcgttcacgtctccggccaacggacgctggcaggtgatcctcgtggaggacgccgag
cggctgaacgagaagtcggccaacgcggtcctgaaggcagtggaggagcccgccccccgc
acggtctggctgctgtgcgccccctccgtggaggacgtcctgccgacgatccgctcccgc
tgccgccacctgaacctgctcacaccttccgtggacgccgtcgcggacatgctcgtacgc
cgggacggcatcgagccggaggccgcgtacgccgcggcccgcgccacgcagggccatgtc
gaccgtgcccgccgcctggccaccgacccgcgcgcgcgggagcgcagggccgccgtgctg
aaaatgccgttgcgggtcgaggacatcggcggctgcctcaaggcggcccaggagctggtc
gacgccgccacggccgactccaagcagctcgccgaggaagtcgacgtgaaggagaccgag
gagatgagggcggcgctcggcggggcacagggcggtcggatgccgcgcggcaccgcgggc
gtgatgaaggacctggaagacaagcagaagcgccggagaacgcgtacgcagcgcgacagc
ctggacctggccctgaccgagctgacgggcttctatcgcgacgtcctcgccctccagctc
ggctcccgcctggccctcgccaacacggacgccgaggacgccctggagcgcctcgcccgc
ggcagctcaccggaggccacactccgccgcatcgacgcgatcgccgcgtgccgggacgcc
ctggaccgcaatgtggcccctctgctggcggtggaggcgatgacgatggcactgcgggcg
gggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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