KEGG   Streptomyces avermitilis: SAVERM_4914Help
Entry
SAVERM_4914       CDS       T00126                                 

Gene name
rpoB
Definition
(GenBank) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sma  Streptomyces avermitilis
Pathway
sma03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SAVERM_4914 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sma03021]
    SAVERM_4914 (rpoB)
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_4914 (rpoB)
Enzymes [BR:sma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SAVERM_4914 (rpoB)
Transcription machinery [BR:sma03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SAVERM_4914 (rpoB)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SAVERM_4914 (rpoB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID: BAC72626
NITE: SAV4914
UniProt: Q82DQ5
Position
5969628..5973113
Genome map
AA seq 1161 aa AA seqDB search
MAASRTASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKVIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGEAPLDAGILTVEDIISSIKYLVKLHAGETETVGDNGTSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRRVTDGVVTDEVDYLTADEEDRFVIAQANAPLGDDFRF
EETRVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSEAPLVGTGMEYRCAVDAGDVLKSEKDGVVQEVSADYVTTANDDGTYTTYRLHK
FSRSNQGTSVNQKVVVDEGARVIAGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADDWAQRLQAIEADQVAPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPTGKAPLFDGRSGEPFPEPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq 3486 nt NT seq  +upstreamnt  +downstreamnt
ttggccgcctcgcgcactgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttccgaaccttcttgcgctg
caaaccgagagcttcgactggctgctcggcaacgacgcgtggaaggctcgtgtcgaggcg
gctctggacagcggacaggacgtccccaccaagtccggtctggaggagatcttcgaggag
atctctccgatcgaggacttctccgggtcgatgtccctgacgttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggaccgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtggtgtcgcagctcgtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgccaaggtcatcccctcccggggcgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtcaccgttctcctgaaggctctcggttggacgaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagcccccgacccgcgaggccgcg
cagacgcttcttgagaacctctacttcaacccgaagcgctacgacctcgcgaaggtcggc
cgctacaaggtcaacaagaagctgggcggcgaggcgccgctggacgccgggatcctgacc
gtcgaggacatcatctcgtcgatcaagtacctggtgaagctgcacgccggtgagaccgag
accgttggcgacaacggcacctcgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtccgcgagcgcatgacgactcaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctcactcacaagcgccgt
ctgtcggctcttggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccgtcgcactacggccgcatgtgcccgatcgagacccccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcttacggccgcgtcaacgcgttcggtttcgtcgagacg
ccgtaccgccgggtcaccgacggtgtcgtcaccgacgaggtcgactacctgacggccgac
gaagaggaccgattcgtcatcgcgcaggccaacgcgccgctcggcgacgacttccggttc
gaggagacccgcgtcctggtccgccgtcgtggcggagaggtcgactacgtccccggtgac
gacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gccgtgccgctgatcaagtccgaggcgccgctcgtcggcaccggcatggagtaccgctgc
gccgtcgacgccggcgacgtgctcaagtcggagaaggacggtgtggtccaggaggtctcc
gcggactacgtcaccaccgccaacgacgacggcacgtacaccacgtaccgcctgcacaag
ttctcccgctccaaccagggcacgtccgtcaaccagaaggttgtcgtggacgagggcgcc
cgggtcatcgccggccaggttctggccgacggcccggcgaccgagaacggcgagatggcg
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggcgacatcctggtcggcaaggtcacgcccaagggtgagaccgagctg
accccggaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggcgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgtgaagagggcgacgagctgccgccgggcgtgaaccagctggttcgtgtctacgtggcg
cagaagcgcaagatcacggacggtgacaagctcgccggccgccacggcaacaagggtgtc
atctcgaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaaccccctcggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggactcgccgacgactgggcg
cagcgcctgcaggccatcgaggccgaccaggtcgccccgggcaccaacgtcgccaccccc
gtcttcgacggtgcgcgtgaggacgagctcgcgggtctgctgcagcacacgatcccgaac
cgcgacggagagcgcatggtgctcccgaccggcaaggcgccgctgttcgacggccgctcc
ggcgagccgttcccggagccgatctcggtcggctacatgtacatcctgaagctgcaccac
ctggtcgacgacaagctgcacgcccgctcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
cttgaggcttatggcgccgcttacgccctccaggagctgctgaccatcaagtccgacgac
gtcaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacattcccgagccc
ggcatccctgagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgcggcggaggagcttggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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