KEGG   Streptomyces avermitilis: SAVERM_4914Help
Entry
SAVERM_4914       CDS       T00126                                 

Gene name
rpoB
Definition
(GenBank) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sma  Streptomyces avermitilis
Pathway
sma03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SAVERM_4914 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sma03021]
    SAVERM_4914 (rpoB)
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_4914 (rpoB)
Enzymes [BR:sma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SAVERM_4914 (rpoB)
Transcription machinery [BR:sma03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SAVERM_4914 (rpoB)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SAVERM_4914 (rpoB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID: BAC72626
NITE: SAV4914
UniProt: Q82DQ5
Position
5969628..5973113
Genome map
AA seq 1161 aa AA seqDB search
MAASRTASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKVIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGEAPLDAGILTVEDIISSIKYLVKLHAGETETVGDNGTSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRRVTDGVVTDEVDYLTADEEDRFVIAQANAPLGDDFRF
EETRVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSEAPLVGTGMEYRCAVDAGDVLKSEKDGVVQEVSADYVTTANDDGTYTTYRLHK
FSRSNQGTSVNQKVVVDEGARVIAGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADDWAQRLQAIEADQVAPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPTGKAPLFDGRSGEPFPEPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq 3486 nt NT seq  +upstreamnt  +downstreamnt
ttggccgcctcgcgcactgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttccgaaccttcttgcgctg
caaaccgagagcttcgactggctgctcggcaacgacgcgtggaaggctcgtgtcgaggcg
gctctggacagcggacaggacgtccccaccaagtccggtctggaggagatcttcgaggag
atctctccgatcgaggacttctccgggtcgatgtccctgacgttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggaccgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtggtgtcgcagctcgtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgccaaggtcatcccctcccggggcgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtcaccgttctcctgaaggctctcggttggacgaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagcccccgacccgcgaggccgcg
cagacgcttcttgagaacctctacttcaacccgaagcgctacgacctcgcgaaggtcggc
cgctacaaggtcaacaagaagctgggcggcgaggcgccgctggacgccgggatcctgacc
gtcgaggacatcatctcgtcgatcaagtacctggtgaagctgcacgccggtgagaccgag
accgttggcgacaacggcacctcgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtccgcgagcgcatgacgactcaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctcactcacaagcgccgt
ctgtcggctcttggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccgtcgcactacggccgcatgtgcccgatcgagacccccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcttacggccgcgtcaacgcgttcggtttcgtcgagacg
ccgtaccgccgggtcaccgacggtgtcgtcaccgacgaggtcgactacctgacggccgac
gaagaggaccgattcgtcatcgcgcaggccaacgcgccgctcggcgacgacttccggttc
gaggagacccgcgtcctggtccgccgtcgtggcggagaggtcgactacgtccccggtgac
gacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gccgtgccgctgatcaagtccgaggcgccgctcgtcggcaccggcatggagtaccgctgc
gccgtcgacgccggcgacgtgctcaagtcggagaaggacggtgtggtccaggaggtctcc
gcggactacgtcaccaccgccaacgacgacggcacgtacaccacgtaccgcctgcacaag
ttctcccgctccaaccagggcacgtccgtcaaccagaaggttgtcgtggacgagggcgcc
cgggtcatcgccggccaggttctggccgacggcccggcgaccgagaacggcgagatggcg
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggcgacatcctggtcggcaaggtcacgcccaagggtgagaccgagctg
accccggaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggcgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgtgaagagggcgacgagctgccgccgggcgtgaaccagctggttcgtgtctacgtggcg
cagaagcgcaagatcacggacggtgacaagctcgccggccgccacggcaacaagggtgtc
atctcgaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaaccccctcggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggactcgccgacgactgggcg
cagcgcctgcaggccatcgaggccgaccaggtcgccccgggcaccaacgtcgccaccccc
gtcttcgacggtgcgcgtgaggacgagctcgcgggtctgctgcagcacacgatcccgaac
cgcgacggagagcgcatggtgctcccgaccggcaaggcgccgctgttcgacggccgctcc
ggcgagccgttcccggagccgatctcggtcggctacatgtacatcctgaagctgcaccac
ctggtcgacgacaagctgcacgcccgctcgaccggtccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
cttgaggcttatggcgccgcttacgccctccaggagctgctgaccatcaagtccgacgac
gtcaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacattcccgagccc
ggcatccctgagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgcggcggaggagcttggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga

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