KEGG   Streptomyces avermitilis: SAVERM_5558Help
Entry
SAVERM_5558       CDS       T00126                                 

Gene name
holA
Definition
(GenBank) putative DNA polymerase III delta subunit
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
sma  Streptomyces avermitilis
Pathway
sma03030  DNA replication
sma03430  Mismatch repair
sma03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SAVERM_5558 (holA)
   03430 Mismatch repair
    SAVERM_5558 (holA)
   03440 Homologous recombination
    SAVERM_5558 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sma03032]
    SAVERM_5558 (holA)
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_5558 (holA)
Enzymes [BR:sma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SAVERM_5558 (holA)
DNA replication proteins [BR:sma03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SAVERM_5558 (holA)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SAVERM_5558 (holA)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_pol3_delta HTH_29
Motif
Other DBs
NCBI-ProteinID: BAC73270
NITE: SAV5558
UniProt: Q82BZ6
Position
6723063..6724073
Genome map
AA seq 336 aa AA seqDB search
MARGMLGAMAKKTAHDDPLAPVTLAVGQEDLLLDRAVQEVVAAARAADADTDVRDLTSDQ
LQPGTLAELTSPSLFAERKVVVVRNAQDLSADTIKDVKSYLGAPAEEITLVLLHAGGAKG
KGLLDAARKAGAREVACPKMTKPADRLAFVRGEFRALGRSATSEAGQALVDSIGSDLREL
ASAVSQLTADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTGVA
PVMITSALAQGVRAIGKLSSARGGRPADLARELGMSPWKIDRVRQQMRGWTPDGVAVALR
AVAEADAGVKGGGDDPEYALEKAVVAIAGAARSRRG
NT seq 1011 nt NT seq  +upstreamnt  +downstreamnt
gtggcgcgtgggatgcttggcgcgatggccaagaagaccgcacatgacgaccctctcgcc
cccgtcacgcttgccgtgggccaggaggacctcctgctcgaccgtgccgtacaggaggtg
gtggccgccgcccgggccgccgacgccgacacggacgtacgtgacctgacctcggaccag
ttgcagcccggcacgctcgccgagctgaccagtccgtcgctcttcgccgagcgcaaggtc
gtggtcgtacgcaacgcgcaggatctctcggccgacacgatcaaggacgtgaagtcgtac
ctgggggcgcccgcggaggagatcaccctcgtgctgctgcatgcgggcggcgccaagggc
aagggcctgctggatgccgcgcgcaaggcgggggcgcgggaggtcgcgtgccccaagatg
acgaagccggcggaccggctggcctttgtgcgcggggagttccgggcgttggggaggtcc
gcgacgtccgaggcgggccaggcacttgtcgactccatcgggagtgatctgcgggagctg
gcgtcggcggtgtcccagctgacggcggacgtcgaggggacgatcgacgaggcggtggtc
gggcggtactacacggggcgggccgaggcgtcgagcttcacggtggcggaccgggcggtc
gaggggagggcggcggaggcgttggaggcgttgcgctggtcgctgtccaccggggttgcg
ccggtcatgatcaccagcgcgttggcgcagggtgtgcgggccattgggaagctgtcgtcc
gctcggggtgggcggccggccgatctggcgcgtgagctggggatgtcgccgtggaagatc
gatcgggttcggcagcagatgcgggggtggacgccggacggggtggctgtggcgctgcgg
gcggtcgcggaggccgacgccggagtgaagggcggcggggatgatcccgagtacgccctg
gagaaggcggtcgtggccattgctggggcggcgcggtctcgacgcgggtag

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