KEGG   Streptomyces avermitilis: SAVERM_6091Help
Entry
SAVERM_6091       CDS       T00126                                 

Gene name
nfo
Definition
(GenBank) putative endonuclease IV
  KO
K01151  deoxyribonuclease IV [EC:3.1.21.2]
Organism
sma  Streptomyces avermitilis
Pathway
sma03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SAVERM_6091 (nfo)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_6091 (nfo)
Enzymes [BR:sma01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.2  deoxyribonuclease IV
     SAVERM_6091 (nfo)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     SAVERM_6091 (nfo)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID: BAC73802
NITE: SAV6091
UniProt: Q82AG6
Position
complement(7327680..7328612)
Genome map
AA seq 310 aa AA seqDB search
MNNQQSRGALGTSGATPDLPDATPGLSRNPVGGHVPVAGGLHSVGLAYARDLAAEAVQVF
VANPRGWATPAGNPRQDEEFRAACAAESIPAYVHAPYLINFGSHTEATVEKSVESLRHSL
RRGREIGALGVVVHTGSATGGRERSVALAQVREHLLPLLDELTHDDDPYLLLESTAGQGA
SLCSRTWDFGPYFEALDAHPKLGVCLDTCHIFAAGHDLTGPSGMHQTLDLLVDTVGEGRL
KLIHANDSKDVVGAHKDRHENIGSGHIGEDPFRALMTHPATEGVPLIIETPGGKEGHAAD
VEQLKKLRDG
NT seq 933 nt NT seq  +upstreamnt  +downstreamnt
gtgaacaatcagcagtcccgcggcgccctcggcacgtccggcgccacccccgacctgccc
gacgccacccccggtctctcccgcaaccccgtcggcggccacgtcccggtggccggtggc
ctccactccgtcggtctggcctacgcccgcgacctcgcggccgaggccgtgcaggtcttc
gtcgccaacccgcgcggctgggcgacgcccgccggcaatccgcggcaggacgaggagttc
cgcgcggcctgtgccgccgagtcgatccccgcgtacgtccatgccccgtatctgatcaac
ttcggctcgcacaccgaggcgaccgtggagaagtccgtggagtcgctgcggcactcgctg
cgcagggggcgcgagatcggcgccctgggcgtggtggtgcacaccgggagcgccaccggc
ggacgggagcggtccgtcgccctcgcccaggtgcgggagcatctgctgcccctgctcgac
gagctgacccacgacgacgacccgtatctgctcctggagtcgaccgcgggtcagggcgcc
tccctgtgctcccggacctgggacttcgggccgtacttcgaggcgctggacgcccacccg
aagctgggcgtgtgcctggacacgtgtcacatcttcgcggcgggccatgacctcaccggg
ccgagcgggatgcaccagacgctcgatctgctggtcgacacggtcggcgaggggcgtctc
aagctgatccacgccaacgactccaaggacgtcgtcggcgcgcacaaggaccgccacgag
aacatcggctccggccacataggcgaggacccgttccgcgctctgatgacccacccggcc
accgagggcgtccctctgatcatcgagacgcccggcggaaaggagggccacgcggcggac
gtggagcagctcaagaagctccgcgacggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system