KEGG   Streptomyces avermitilis: SAVERM_6835Help
Entry
SAVERM_6835       CDS       T00126                                 

Gene name
ruvB
Definition
(GenBank) putative Holliday junction DNA helicase subunit A
  KO
K03551  holliday junction DNA helicase RuvB [EC:3.6.4.12]
Organism
sma  Streptomyces avermitilis
Pathway
sma03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SAVERM_6835 (ruvB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_6835 (ruvB)
Enzymes [BR:sma01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     SAVERM_6835 (ruvB)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SAVERM_6835 (ruvB)
    RecFOR pathway proteins
     SAVERM_6835 (ruvB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_16 TIP49 Mg_chelatase Sigma54_activat DUF815 AAA_3 TsaE AAA_14 Sigma54_activ_2 RNA_helicase T2SSE AAA_28 Zeta_toxin AAA_19 AAA_18
Motif
Other DBs
NCBI-ProteinID: BAC74546
NITE: SAV6835
UniProt: Q820F3
Position
8157959..8159029
Genome map
AA seq 356 aa AA seqDB search
MNWDDTTDATADERLVGASADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARG
ATSDHVLLSGAPGLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFL
DEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLR
DRFGFTAHMEFYEPHELERVIHRSAGLLDVEIDSRGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGVITREIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGE
ERETVEEVAEPFLVREGLLARTPRGRVATPAAWAHLGLTPPPRATGGNGQGDLFGA
NT seq 1071 nt NT seq  +upstreamnt  +downstreamnt
gtgaactgggacgacacgaccgacgcgaccgccgacgagcggctcgtcggcgcgtccgcc
gaccgtgaggaccaggccgtcgaggccgccctgcggcccaaggacctggacgagttcatc
ggccaggagaaggtccgcgagcaactcgacctcgtcctgcgggccgcacgcgcgcgtggc
gcgacctccgaccacgtactgctctccggcgctcccggcctcggcaagaccaccctctcc
atgatcatcgcggccgagatgggcgccccgatccgcatcaccagcggccccgccatccag
cacgccggcgacctcgcggcgatcctctcctccctccaggagggcgaggtcctcttcctc
gacgagatccaccgcatgtcccggcccgccgaggagatgctgtacatggccatggaggac
ttccgcgtcgacgtcatcgtcggcaagggccccggcgccaccgccatccccctcgaactg
cccccgttcaccctggtcggcgccaccacgcgcgcgggtctgctgccgcccccgctgcgt
gaccgcttcggcttcacggcacacatggagttctacgagccccacgagctggagcgcgtg
atccaccgctcggccggcctgctcgacgtcgagatcgactctcgtggcgcggccgagatc
gcgggccgctcccggggcacgccccgtatcgccaaccgtctgctgcgccgcgtacgggac
tacgcccaggtcaaggcggacggcgtcatcacccgtgagatcgcggcggccgcgctgaag
gtctacgaggtggacgcccgcggcctcgaccgcctggaccgcggcgtcctcgaagccctg
ctgaagctgttcggcggcggcccggtcggcctgtccacgctcgccgtcgcggtgggggag
gagcgcgagaccgtcgaggaggtcgccgagcccttcctggtacgggagggactgctcgcc
cgcacaccccgtggccgggtcgcgacaccggccgcctgggcccacctcggcctcaccccg
ccccctcgggctaccgggggaaacggacaaggggacctgttcggggcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (20)   
   Pfam (20)   
All databases (32)   

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