KEGG T03985: SMDB11

Serratia marcescens subsp. marcescens Db11: SMDB11_1984

Entry

SMDB11_1984       CDS       T03985

Symbol

xthA

Name

(GenBank) exonuclease III

K01142

exodeoxyribonuclease III [EC:3.1.11.2]

Organism

smac Serratia marcescens subsp. marcescens Db11

Pathway

smac03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:smac00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SMDB11_1984 (xthA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smac03400]
    SMDB11_1984 (xthA)
Enzymes [BR:smac01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     SMDB11_1984 (xthA)
DNA repair and recombination proteins [BR:smac03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     SMDB11_1984 (xthA)

SSDB

Motif

Pfam:

Exo_endo_phos Exo_endo_phos_3

Other DBs

NCBI-ProteinID:

CDG12560

Position

2102698..2103504

AA seq 268 aa
MKFVSFNINGLRARPHQLAAIIEQHQPDVIGLQETKVHDDMFPLEDVSQHGYHVFYHGQK
GHYGVALLTKAEPLAVRRGFPTDEEDAQRRIIMADLATPQGTLTVINGYFPQGESRDHPI
KFPAKTRFYQDLQNYLEQQLSAESPVLIMGDMNISPSDYDIGIGEDNRKRWLRTGKCSFL
PEEREWMDRLLNWGLVDTYRHANPGRSDEFSWFDYRSKGFDDNRGLRIDLLLASTPLASR
CIATGIDYQTRGMEKPSDHAPVWAEFTL

NT seq 807 nt +upstreamnt +downstreamnt
atgaagtttgtctcttttaatatcaatggactgcgcgcgcgtccgcatcagctggcggca
attatcgaacagcaccagcccgacgtgatcggtctgcaggaaaccaaagttcacgatgac
atgttcccattggaagacgtcagccaacacggctaccacgtattctatcacgggcaaaaa
ggccattacggcgtggcgctgctgaccaaagcggagcctctggccgtgcgccgcggtttc
ccgaccgatgaagaagatgcgcagcgtcgcatcatcatggccgatctggctacgccacag
ggcacgctgacggtgatcaacggctacttcccgcaaggtgaaagccgcgaccatccgatc
aaattcccggctaaaacgcggttttatcaggacctgcaaaattacctggagcaacagctg
tcggcagaatccccggtgctgatcatgggcgacatgaatatcagccccagcgattacgat
atcggcatcggcgaagacaaccgcaaacgctggctgcgcaccggtaaatgctccttcctg
ccggaagaacgtgaatggatggaccgcctgctgaactggggcctggtggatacctaccgc
cacgccaacccggggcgcagcgacgaattctcgtggttcgactaccgctccaaagggttc
gacgacaaccgcggcctgcgtatcgatctgctgctcgccagcaccccgctggcttcacgc
tgcatcgccaccggcatcgattaccaaacccgtggtatggaaaaaccttccgaccatgca
ccggtctgggcggaatttacgctgtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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