KEGG   Serratia marcescens subsp. marcescens Db11: SMDB11_4264
Entry
SMDB11_4264       CDS       T03985                                 
Symbol
rho
Name
(GenBank) transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
smac  Serratia marcescens subsp. marcescens Db11
Pathway
smac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SMDB11_4264 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smac03021]
    SMDB11_4264 (rho)
   03019 Messenger RNA biogenesis [BR:smac03019]
    SMDB11_4264 (rho)
Transcription machinery [BR:smac03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SMDB11_4264 (rho)
Messenger RNA biogenesis [BR:smac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SMDB11_4264 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: CDG14824
Position
4572479..4573738
AA seq 419 aa
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgcatgcgcaagcaggacattatcttctccattctgaag
caacatgcgaaaagcggagaagatatcttcggcgacggcgtgctcgagatattgcaggat
ggattcggtttcctccgctctggagacagttcctacctcgccggtcccgacgacatctat
gtatcccctagccaaatccgccgcttcaacctccgcacaggtgacaccatttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgttgaaagtcaacgaagtcaac
tacgacaagccggaaaacgcccgcagcaagatcctgttcgagaacttgacgccgctgcac
gccaattcccgtctgcggatggagcgcggcaacggctcgaccgaagacctgacggcgcgc
gtactggacctggcggcaccgattggccgcggccagcgtggcctgatcgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacattgcgcagagtatcgcttacaatcaccca
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgcctggtgaaaggtgaagtgatcgcatcgaccttcgacgaaccggcttcgcgccacgtg
caagtggccgaaatggtaatcgagaaggccaaacgcctggttgagcacaagaaagacgtg
atcattctgcttgactctatcacccgtctggcgcgtgcctacaacaccgtggtaccggct
tccggtaaggtgctgaccggtggtgtggacgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgtggaagagggcggcagcctgaccatcatcgcgaccgcgctg
gttgataccggttcgaagatggacgaagtgatctacgaagaatttaaaggtaccggcaac
atggaattgcacttggcgcgtaaaatcgccgagaaacgcgtattcccggcgatcgattac
aaccgctccggtacccgtaaagaagagctgctcaccacctctgaagagctgcaaaaaatg
tggatcctgcgcaaaatcattcatccgatgggtgagattgacgcgatggagttcctcatt
aataagttggcgatgactaaaaccaacgatgaattcttcgatatgatgaaacgctcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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