KEGG   Serratia sp. FGI94: D781_4529
Entry
D781_4529         CDS       T02433                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
smaf  Serratia sp. FGI94
Pathway
smaf03030  DNA replication
smaf03410  Base excision repair
smaf03420  Nucleotide excision repair
smaf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smaf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D781_4529
   03410 Base excision repair
    D781_4529
   03420 Nucleotide excision repair
    D781_4529
   03430 Mismatch repair
    D781_4529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smaf03032]
    D781_4529
   03400 DNA repair and recombination proteins [BR:smaf03400]
    D781_4529
Enzymes [BR:smaf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     D781_4529
DNA replication proteins [BR:smaf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     D781_4529
DNA repair and recombination proteins [BR:smaf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     D781_4529
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D781_4529
   MMR (mismatch excision repair)
    DNA ligase
     D781_4529
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      D781_4529
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 RecR_HhH HHH RNA_ligase
Other DBs
NCBI-ProteinID: AGB84691
UniProt: L0MPN3
Position
complement(4768731..4770455)
AA seq 574 aa
MKGHLFYGAVFFILAMVISACVQAETCPHWPAERLRNELNALEEQLARWDAAYYQRGQSL
ISDELYDSLRQKQQFWRICAGRAGEPPLPLLPAGKMPHPVAHTGLRKLTDRRAVARWLAE
RRDVWLQPKIDGVAVTLVYRQGKLAQAISRGDGRQGEDWLEKVRVIPGVPSTLAGAPDFL
VLQGELFLLMTGHRQQVHGGVNARASVAGALMRNRPSERLAQLGIFIWAWPDGPPEMSQR
LAQLAAWGFTLARDYTRPVSSVEDVIRWRERWFATPLPFVTDGVVLHQARSPSGRYWRNK
PALWAVAWKYPPAEQVTRVERVMFRIGRTGKITVVLALDPLQLDDKWVRRVNIGSLARWR
FWDIVPGDQVAVSLKGQGIPQVTRVAWRSVERPVLTAPDAERYHAFSCFTPQAGCRQQFI
ARLVWLSGPQGLMMNGVSEASWRMLVEHGRVKELADWLTLTPESLRTLPGVGDKQAQRLH
QQFMLARRQPFQRWLLALGVPLSAEQLAGVTGWQQAKRLPTHIWQRQAGVGDKRAAQLVA
FFRQPALQRVANSLQRQHIAGFADDALSDPDVDN
NT seq 1725 nt   +upstreamnt  +downstreamnt
atgaaaggacaccttttttacggcgccgtgttttttattctcgcgatggtcatctccgct
tgcgtgcaggcggaaacctgtccgcactggccggcggagcggctgcgcaacgaactgaat
gcgttggaagagcagctggcgcgttgggatgcggcctattaccaacgcgggcaaagtttg
attagcgacgaactctatgacagcctgcggcaaaagcagcagttttggcggatttgcgcc
gggcgggcgggggagccgccgctgccgctgttgccggcgggaaaaatgccccatccggtc
gctcataccgggctgcgcaagctgacggaccgccgggcggtagcccgctggctggcggag
cgccgtgacgtgtggctacagccgaagatcgacggcgtggccgtaacgctggtgtaccgg
cagggcaaactggcgcaggcgatcagccgcggcgacggccggcagggggaagactggctg
gagaaggtcagggtgatccccggcgtgccgtcaacgctggcgggcgcgccggactttctg
gtgctgcagggggaactgtttctgctgatgaccggtcatcgccagcaggttcacggcggc
gtcaacgcgcgcgccagcgttgccggcgcactgatgcgtaaccggccctcggaacggctg
gcgcagctggggattttcatctgggcctggcccgatggcccgcccgagatgtcgcagcgg
ctggcgcagctggcggcgtggggctttacgctggcgcgggactatacccggccggtgagc
tcggtagaggacgttatccgttggcgtgagaggtggtttgccactcccctgccttttgtc
accgatggtgtggtgctgcatcaggctcgttcgccgtccgggcgctactggcgtaataag
ccggcgctgtgggcggtagcgtggaaatatccgccggcagaacaggtgacgcgcgtggag
cgggtgatgttccgcattggccgcaccggcaaaattacggtggtgctggctttggatccg
ctgcaactggatgataaatgggtgcgacgcgtcaacatcggttcgctcgcccgctggcgg
ttctgggacatcgtgcccggtgatcaggtcgccgtcagcctgaagggacaggggatcccc
caggtgacccgcgtggcgtggcgcagcgtggaacggcctgtgctgacggcgccggatgcc
gagcgctatcacgccttcagctgctttaccccgcaggccggttgccggcagcagtttatc
gcgcggcttgtgtggctgagcggcccgcaggggttgatgatgaacggcgtcagcgaagcc
agctggcgcatgctggtcgaacacggacgggtgaaagaactggcggactggctgacgctg
acgccggaaagcctgcgcacgctgccgggggtgggtgataagcaggcgcagcggctgcat
cagcaatttatgctggcgcggcggcagccgttccaacgctggctgctggcgttgggggtg
ccgctgtcggccgaacaacttgccggggtgacggggtggcaacaggccaaaaggttgccg
acgcatatatggcagcggcaggccggcgtcggcgataaacgggcggcgcagctggttgct
ttcttccgccagccggcgctacagcgcgtggcaaacagcctgcagcggcagcatatcgcc
ggctttgccgacgatgcgctcagtgatccggatgttgataattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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