KEGG   Shewanella maritima: EXU30_05210
Entry
EXU30_05210       CDS       T06365                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
smai  Shewanella maritima
Brite
KEGG Orthology (KO) [BR:smai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:smai03009]
    EXU30_05210 (rlmD)
Enzymes [BR:smai01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     EXU30_05210 (rlmD)
Ribosome biogenesis [BR:smai03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    EXU30_05210 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 TRAM Met_10 PCMT MTS Methyltransf_15 Methyltransf_11 Methyltransf_23 Cons_hypoth95 Methyltransf_12 Methyltr_RsmB-F Ubie_methyltran Methyltransf_4 Methyltransf_32 RrnaAD PrmA N6_N4_Mtase
Other DBs
NCBI-ProteinID: QBF82165
UniProt: A0A411PF41
Position
complement(1235802..1237181)
AA seq 459 aa
MAQFYKPKANKSKQLSSKLTLDVTQLDHLGAGVAEHNGKVVFIPGALSGETVSAQFVEQK
KNFAKAKLLKVMQPSDDRIKPFCRHYQQCGGCDMQHLQHNQQIAHKRTSLMNLIKKLSPI
KQVDDAVLVGDITSEPVHYRRRARLATLFNKQANELKLGFRSPGSNKVVAIDECQVLAKP
LSELIAPFAKALNQLKAKTSLGHLELTQSEDEVLAVLRVTKSLPNSDKKWLINLAEKLKV
RLLLQDDQGELLQLFPVLEHREKDKDQAVALPYYLLADDRIRCSFTPGNFVQVNAQVNKA
MVEQAIDWLAPQAGERILDLFCGVGNFSLPLALKQAEVIGVEGVPEMVEQASANAKVNGL
DNINFYHADLSSDLNQQPWLGKIDKLLLDPARAGAYECLENLEQMQPKSIVYVSCNPASL
ARDIEVLVKYGYQLTRLANIDMFPQTHHIEAMALFELET
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggcgcaattttacaaaccaaaagccaataaatccaaacaattatcaagcaagctgact
ttagatgtaacccagcttgaccatttaggtgccggcgtagccgagcataatggcaaagtg
gtttttattcctggcgccctgtcaggcgagactgtaagcgctcaatttgtcgagcaaaaa
aagaatttcgccaaagccaagctgttaaaagtcatgcaacctagtgatgacagaatcaaa
cctttttgtcgtcactaccagcagtgtggcggctgtgacatgcaacatttacagcataat
cagcaaattgcccataagcgaactagcttgatgaatttaattaaaaagttgtcaccgatt
aagcaagttgatgacgctgtgctcgtgggtgatattacgagcgaaccggtgcattaccgc
cgccgcgcgcgcttagccacgttatttaataaacaggcgaacgaactcaagctaggtttt
cgttcacctggctctaacaaggttgttgccattgacgaatgtcaggtactagcaaagccg
ttatctgaattgattgcgccgtttgcaaaagcacttaatcaattaaaagctaaaacgagt
ttagggcatttggagctaacacaatctgaagatgaagtgctcgcggtactaagagttact
aaatcactacccaattcagataagaagtggctaattaatttagctgaaaagttgaaagtt
cggctattactccaagacgaccaaggcgagttattgcagctgtttcctgtgcttgaacac
agggaaaaagataaagaccaagcagttgccttaccttattacttgctcgcagatgatcgc
attcgctgctcatttacacctggtaattttgttcaggtcaacgcgcaggtgaataaagca
atggtcgagcaggctattgattggctcgccccacaagcaggagagcgaatactggatttg
ttctgcggtgtgggaaatttcagtttgccgctggcgctcaagcaagctgaagttatcggt
gttgaaggtgttcctgaaatggtcgagcaagccagtgcgaatgctaaggttaatggcttg
gataacattaacttttatcacgctgatttaagcagtgacttaaatcagcaaccatggctt
ggaaaaatcgataaattactgttagatcctgcgcgggctggtgcttatgagtgcctagaa
aaccttgagcaaatgcagcctaaaagcattgtttacgtgtcttgcaatccagcaagtctc
gctcgtgatatcgaagttttagttaagtatggttatcaattaacccgactggctaatatc
gacatgttcccgcaaactcatcatatcgaggcgatggcgctatttgagcttgaaacgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (27)   

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