KEGG T05189: SMALA

Streptomyces malaysiensis: SMALA_4317

Entry

SMALA_4317        CDS       T05189

Name

(GenBank) hypothetical protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

smal Streptomyces malaysiensis

Brite

KEGG Orthology (KO) [BR:smal00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:smal03016]
    SMALA_4317
Enzymes [BR:smal01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     SMALA_4317
Transfer RNA biogenesis [BR:smal03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    SMALA_4317
Prokaryotic type
   tRNA splicing ligases
    SMALA_4317

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

ATL84550

UniProt:

A0A291SUN4

Position

5438556..5439749

AA seq 397 aa
MSYVEVPGARVPIRMWTDPSTVEGVAMEQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTADDLPGDLSRLRSKIEQTIPVGRGMHDDPVDPG
RLHAFPTGGWDDFWSRFGGVAEAVKFRQERAVKQMGSLGSGNHFIEFCLDDEGSVWLMLH
SGSRNIGKELAEYHIGEARKLPHNQDLVDRDLAVFIADTPQMAAYRHDLFWAQEYAKYNR
AIMMALFQDVVRKEFKKARPVFEPVISCHHNYVAEERYEHMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNEASFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVARLKQVVCVKG

NT seq 1194 nt +upstreamnt +downstreamnt
atgtcgtatgtcgaggtgcccggcgctcgggtgccgatccggatgtggaccgacccttcg
acggtcgagggcgtggccatggagcagctgcgcaatgtggccacgctgccctggatcaag
ggcctcgccgtgatgccggatgtgcattacgggaagggtgccacggtcggctcggtgatc
gcgatgcagggcgcggtgtgcccggccgcggtgggtgtggacatcggctgcgggatgtcg
gcggtcaagacgtcgctgaccgcggacgaccttccgggggatctctcgcggctgcggtcc
aagatcgagcagacgatcccggtggggcgcggaatgcacgacgacccggtggacccgggg
cggctgcacgcgtttcccaccgggggctgggacgacttctggagccggttcgggggagtg
gccgaagcagtcaagttccgccaggagcgggccgtcaagcagatgggttcgctcgggtcc
ggcaaccacttcatcgagttctgcctcgatgacgagggttcggtctggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgagtaccacatcggcgaggcccggaag
ctgccgcacaaccaggatctggtcgaccgcgacctggccgtcttcatcgcggacaccccg
cagatggcggcgtaccggcacgatctgttctgggcgcaggagtacgcgaagtacaaccgc
gcgatcatgatggcgctcttccaggacgtggtgcgcaaggagttcaagaaggcccgcccg
gtcttcgagccggtgatcagttgccaccacaactacgtcgccgaggagcgctacgagcac
atggaccttctcgtgacccgtaagggcgccatccgcgccggcagcggggactacgggatc
atcccgggctcgatgggcaccggttcgtacatcgtgcgcggcctggggaacgaggcgtcg
ttcaactcggcctcgcacggcgcgggccggaagatgagccgtaacgcggcgaagaagcgc
ttctcgacccgggatctggaggagcagacgcggggcgtggagtgccgtaaggactccggc
gtcgtcgacgagatccccggggcgtacaagccgatcgagaaggtcatcgaccagcagcgg
gacctcgtcgaggtggtggcgaggctcaagcaggtcgtgtgtgtgaagggctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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