KEGG   Streptomyces malaysiensis: SMALA_7131
Entry
SMALA_7131        CDS       T05189                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
smal  Streptomyces malaysiensis
Pathway
smal03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:smal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SMALA_7131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smal03400]
    SMALA_7131
Enzymes [BR:smal01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     SMALA_7131
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SMALA_7131
DNA repair and recombination proteins [BR:smal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SMALA_7131
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS zf-TFIIB Ribosomal_S13 Zn-ribbon_8
Other DBs
NCBI-ProteinID: ATL87351
UniProt: A0A291T2U1
Position
8777853..8778719
AA seq 288 aa
MPELPEVETLAAMLAERAAGREIARVLPVAVSVLKTYDPPLSALEGRTVTAAARHGKFLD
LATDGPHLVVHLAKAGWLRWRDGLPEAPPRPGKGPLALRLLLAGPERSGFDLTEAGTRKG
LAVYVVRDPQEVPGIARLGPDPLDDSFTLETFAGLLRGVRHRIKGVLRDQSVIAGIGNAY
SDEILHAARMSPYRLASDLTEEEIAGVYEAMGTTLRSAVERSRGLAATDLKGEKRDGMRV
HGRAGQPCPVCGDTVREVSFRDSALQYCPTCQTGGKPLADRRLSRLLK
NT seq 867 nt   +upstreamnt  +downstreamnt
atgccggagctgcccgaggtggagaccctcgccgcgatgctggccgagcgcgccgccggc
cgggagatcgcccgtgtcctccccgtcgcggtgagcgtcctgaagacctacgacccgccg
ctgagcgcgctcgaaggccgcaccgtcacggcggcggcccgccacggcaagttcctcgac
ctggccaccgacggcccccatctggtcgtccacctcgccaaggcgggctggttgcgctgg
cgggacggactccccgaggccccgccccgccccggcaagggcccgctcgcgctgcggctg
ctcctggccggcccggagcgctccggcttcgacctcaccgaggccgggacgcgcaagggg
ctcgcggtgtacgtggtccgcgacccccaggaggtccccggcatcgcccggctgggcccg
gacccgctggacgactccttcaccctggagaccttcgccgggctgctgcgcggcgtacgc
caccggatcaagggggtgctgcgcgaccagagcgtcatcgccgggatcggcaacgcctac
tccgacgagatcctgcacgccgcccggatgtcgccctaccggctcgcctcggatctcacc
gaggaggagatcgccggggtgtacgaggcgatgggcaccacgctgcgctccgccgtcgag
cgctcccgcggcctggccgccaccgacctcaagggggagaagcgcgacggcatgcgggtg
cacggccgcgccggacagccgtgcccggtgtgcggggacaccgtccgcgaggtgtccttc
cgcgactccgcgttgcagtactgccccacctgccagaccggtggcaagccgctcgccgac
cgccggctgtcccggctgctcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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