KEGG   Shewanella marisflavi: CFF01_01675
Entry
CFF01_01675       CDS       T05400                                 
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:3.6.4.13]
Organism
smav  Shewanella marisflavi
Pathway
smav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFF01_01675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smav03019]
    CFF01_01675
Messenger RNA biogenesis [BR:smav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CFF01_01675
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_22 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: ASJ95395
UniProt: A0A4Y6IWS4
Position
362750..364057
AA seq 435 aa
MSETHLTNQKFADFSLHPEIQQALIESGFEYCTPIQALSLPILLQHKDIAGQAQTGTGKT
LAFLVATFNHLLTTPIPEGRQTNQPRAIVMAPTRELAIQIAKDANLLAKHTGLKVGIVYG
GESYDVQRKVLDKGVDILIGTTGRIIDYVRQGVINLNTIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDANARLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSQ
EEKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGDLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSISFA
CEEYALNLPAIESYIQHSIPVTNYDSEALLDDIPPPVRIHRKHAPRPAGRSGSGKPQGGR
PGARPRRHDRTRRHS
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgagcgaaacacatttaacaaatcaaaagtttgccgacttttctctacatccagagata
caacaggcactaatcgaaagcggctttgaatattgcacgcctatccaggcattatcatta
ccgattttactccagcataaagatatcgcaggtcaagcacagacaggtacaggtaaaact
ctggcttttctggtcgccactttcaatcatctgctaaccactccgatccctgagggacgt
caaactaatcagcctagagccatagtgatggcgccgactcgcgaactggccattcagatc
gccaaggacgctaatttactggcaaaacataccggccttaaggtgggtattgtctatggt
ggcgagagctacgatgtgcagcgcaaggtgttagataaaggcgttgatatcttgattggt
accacgggacgtatcatagattacgtgcgccagggtgtcattaacctcaataccattcag
gcagtggtattagatgaggccgatcgcatgttcgatcttggctttatcaaagatattcgc
ttccttttcagacgcatgccagatgccaatgcgcgtttgaacatgttgttctcggcaact
ttatcgatgaaggtgcaggagctggcttatgatcatatgaatgatcctgagaaagtggaa
attgccccaagcgaaaaaacctcgaaaaatattactgaagagatcttctatccttcacag
gaagagaagatgcgcttgctgctgaccttgattgaagaagattggcctgaaaaagcgatt
gtattctctaacactaagcacagctgcgaaaatctatgggcgcatctagaaggtgacggt
catcgcgttggtttgcttactggtgatgtgccacagaagaagcgtattcgcattcttgag
cagttcacctctggcgacttagatatcttagtggcaaccgatgttgcggcgcgtggatta
catatttctgatgtgtcgcacgtttacaactatgatcttccagatgattgcgaagattat
gtacaccgtatcggtcgtaccggacgtgcaggtcaaaaaggggtctctatcagtttcgct
tgtgaagagtacgccctcaacctgccggctatcgagagttatattcaacatagcattcct
gtgaccaactacgacagcgaggcgctgctcgatgatattccaccaccggtgcgcattcat
cgtaagcatgccccacgtcctgccgggcgctctggtagcggtaaaccccaaggtggtcgt
ccgggcgcacgcccaagacgccatgataggacgcgtagacacagttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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