KEGG   Sphingopyxis macrogoltabida 203: LH19_13635
Entry
LH19_13635        CDS       T04627                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
smaz  Sphingopyxis macrogoltabida 203
Pathway
smaz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:smaz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LH19_13635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smaz03021]
    LH19_13635
   03400 DNA repair and recombination proteins [BR:smaz03400]
    LH19_13635
Enzymes [BR:smaz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LH19_13635
Transcription machinery [BR:smaz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LH19_13635
DNA repair and recombination proteins [BR:smaz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LH19_13635
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Phage_Mu_Gam DUF4292
Other DBs
NCBI-ProteinID: ALJ13912
UniProt: A0A0P0D3U5
Position
complement(2692171..2696349)
AA seq 1392 aa
MATKAKSVGKALEATATKRIRKLFGNIHEAVEMPNLIEVQRESYEQFLRSDPSVGYVSGL
EKTLRSVFPIRDFAGTAELDFVHYELEAPKYDVEECRQRGITYAAPMKVTLRLIVFEVDS
ETDTRSVLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHSS
GKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMSGEEILNHFYDR
LVFERAENGWKVPFVVENWRGSKPAFDVVDAKTGEVVFAAGHKISPRLANKAAKDGLDTL
LIPTEEIFGRYSAYDLINEATGEIYIEAGDEVSADNLEKIDAAGLDKLVLLDIDHNNTGP
WIRNTLKADKAEDRDQALSDIYRVMRPGEPPTRETAEALFGGLFFDPERYDLSAVGRVKL
NMRLSLDAEDTVTTLRSEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYR
VGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG
FIETPYRRIVDGKVTNDVVYLSAMEEQKHTVAQANADLNADGSFIDELISAREAGEFLMA
PRDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPVVGTGME
ETVARDSGAAIAARRGGVIDQVDATRIVIRATDMVEPGKSGVDIYRLQKFQRSNQNTCIN
QRPLVKVGDVVRSGDIIADGPSTELGELALGKNVLVAFMPWNGYNYEDSILISERIVKDD
VFTSIHIEEFEVTARDTRLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILAGK
ITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGIDKDERAI
AIEREEIERLKQDADDERAILNRATFSSLKDLLIGQTTSAVPKGLKKGDVVTEEMLVELD
RADWWKLAVVEDNAQTALEAIKAQYDDAIKRINAKYEDRVEKLQRGDELAPGVLKMVKVF
VAVKRKLQPGDKMAGRHGNKGVISRILPNEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIL
ETHLGWASRGLGRQVTQALDEWRDANPDAVGGQMPEAVRDALEHVYGAEYVDDIKSRDAD
SIVELADNLRVGVPFATPVFDGAKEADVSNMLTLAGLHDSGQSDLYDGRTGDKFDRKVTV
GYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL
QEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSYADEDP
DEGPEALPEAAE
NT seq 4179 nt   +upstreamnt  +downstreamnt
atggcgaccaaggcgaagtcggtgggcaaggccctcgaagcaaccgcgaccaagcgaatc
cgcaagctgttcggcaacatccacgaagcggtggagatgcccaacctcatcgaggtgcag
cgcgaatcctatgagcagttcctgcggtccgacccctcggtcggttatgtttcgggcctc
gaaaagacgctgcgcagcgttttcccgatccgcgatttcgccggtaccgccgagctcgat
ttcgtccattacgaactcgaagcgccgaagtatgacgtcgaggaatgccgtcagcgcggc
atcacctatgcggcgccgatgaaggtcacgctgcgcctgatcgtctttgaagtcgacagc
gaaaccgacacccgttcggtgctcgatatcaaggagcaggacgtctacatgggcgacatg
ccgctcatgaccgagaacggcaccttcttcgtcaacggcaccgagcgcgtcatcgtgtcg
cagatgcaccgttcgccgggtgtgctcttcgaccatgaccgcggcaagacccactcgtcg
ggcaagttcctgttcgccgcgcgcgtgatcccgtatcgcggttcgtggctcgacttcgaa
ttcgacgccaaggacatcgtcaacgtccgtatcgaccgcaagcgcaagctgccggtcacc
agcctgctgtatgcgctgggcatgtcgggcgaggaaatcctcaaccatttctatgaccgc
ctcgtcttcgagcgcgccgaaaacggctggaaggtgcccttcgtcgtcgaaaactggcgc
ggttcgaagcccgcgttcgatgtcgtcgacgccaagaccggcgaagtcgtcttcgccgcc
ggccacaagatcagcccgcgccttgccaacaaggccgcgaaggacggtctagacacgctg
ctgatcccgaccgaggaaatcttcggccggtacagcgcctatgacctgatcaacgaagcg
acaggcgagatctacatcgaggcgggcgacgaagtgtcggccgataacctcgaaaagatc
gatgccgcgggcctcgacaagctcgtcctgctcgacatcgaccacaacaacaccgggccg
tggatccgcaacacgctgaaggccgacaaggccgaggatcgcgaccaggcgctttcggac
atctaccgcgtcatgcgccccggcgaaccgccgacgcgcgaaaccgccgaagcgctgttc
ggcggcctgttcttcgaccccgagcgctacgacctgtcggccgtcggccgcgtcaagctc
aacatgcgcctcagcctcgatgccgaggacaccgtcaccacgctgcgcagcgaggacatc
ctcgccgtggtcaaggaattggtgaacctgaaggacggcaagggcgaaatcgacgatatc
gacaacctcggtaaccgtcgtgtacggtcggtcggcgaactgctcgaaaaccagtatcgc
gtcggcctgctccgcatggagcgcgcggtgaaggagcgcatgagctcggtcgatgtgtcg
acggtgatgccgaacgacctgatcaacgcgaagcccgcggttgccgcggtgcgcgaattc
ttcggttcgtcgcagctctcgcagttcatggaccagaccaacccgctgtccgaagtcacc
cacaagcgccgcgtgtcggcgctcgggccgggcggtctgacccgcgaacgtgcgggcttc
gaagtccgcgacgttcacccgacccactatggccgcatctgcccgatcgaaacgccggaa
ggcccgaacatcggtctgatcaacagcctcgcgaccttcgcgcgcgtcaataagtatggc
ttcatcgagaccccgtaccgccgcatcgtcgacggcaaggtcaccaacgacgtcgtctat
ctgtcggcgatggaagagcagaagcacaccgtcgcgcaggcaaacgccgacctcaacgcc
gacggcagcttcatcgacgagctgatctcggcgcgcgaagcgggcgaattcctgatggcg
ccgcgcgatcagatcacgctgatggacgtgtcgccgaagcagctcgtttcggttgcggcg
tcgctgatcccgttcctcgaaaacgatgacgccaaccgcgcgctcatgggttcgaacatg
cagcgtcaggctgtgccgctgctgcgcgccgaagcgcccgtggtcggcaccggcatggaa
gaaaccgttgcgcgcgattcgggcgcggccatcgcggcccgccgcggcggcgtgatcgac
caggtcgatgcgacgcgtatcgtcatccgcgcgaccgacatggtcgagcccggcaagtcg
ggcgtcgacatctatcgcctgcagaagttccagcggtcgaaccagaacacctgcatcaac
cagcgtccgctggtgaaggtgggcgatgtcgtccgctcgggcgacatcatcgccgacggt
ccgtcgaccgaactcggcgaactggcgctcggcaagaatgtgctcgtcgcgttcatgccg
tggaacggctacaattatgaggactcgatcctcatttccgaacgcatcgtgaaggacgac
gtcttcacctcgatccacatcgaggaattcgaagtcaccgcgcgcgacacgcgccttggg
ccggaagacatcacgcgcgacatcccgaatgtcggcgaggaggccctccgcaacctcgac
gaagcgggcatcgtctatatcggtgccgaagtcggcccgggcgatattctggccggcaag
atcacccccaagggtgaatcgccgatgacgccggaagaaaagctgctgcgggcgatcttc
ggtgaaaaggccagcgacgtgcgcgacacctcgctgcgtctgccgccgggcgtgtcgggc
acggtcgtcgaagtccgcgtcttcaaccgccacggtatcgacaaggacgaacgcgcgatc
gcgatcgaacgcgaagagatcgaacgcctgaagcaggacgccgacgacgaacgcgcgatc
ctcaaccgcgcgaccttctcgagcctcaaggacctgctgatcggtcagacgaccagcgcg
gtgccgaaaggcctgaagaagggcgatgtcgtcaccgaagagatgctggtcgaactcgac
cgcgccgactggtggaagctcgccgtggtcgaagacaatgcccagaccgcactggaagcg
atcaaggcgcagtatgacgacgcgatcaagcggatcaacgcgaagtatgaagatcgcgtc
gaaaagctgcagcgcggcgacgaactcgcccccggcgtgctcaagatggtcaaggtcttc
gttgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaag
ggcgtcatcagccgcatcctgccgaacgaggacatgccgttcctcgaagacgggacgcat
gtcgatatcgtgctgaacccgctgggcgtgccgtcgcgcatgaacgtcgggcagatcctc
gaaacccacctcggctgggcttcgcgcggtctgggccgtcaggtcacgcaggcgctcgac
gaatggcgcgacgccaatcccgacgcggtcggcgggcagatgcccgaagccgtgcgcgat
gcgctcgaacatgtctatggcgccgaatatgtcgacgacatcaagtcgcgcgatgccgac
agcatcgtcgaactggccgataatctgcgcgttggcgtgccgttcgcgaccccggtgttc
gacggcgccaaggaagccgacgtgtcgaacatgctgacccttgcgggcctgcatgactcg
ggtcagtcggacctctacgacggccgcaccggcgacaagttcgaccgcaaggtgaccgtg
ggctacatctatatgctgaagctccaccacttggtcgacgacaagatccacgcgcgttcg
atcgggccgtacagcctcgtcacccagcagccgctgggcggtaaggcacagttcggtggc
cagcgcttcggtgaaatggaggtctgggcgctccaggcctatggcgcggcatacacgctg
caggaaatgctgacggtgaagtccgacgacgtgatcggccgcaccaaggtttacgaagcg
atcgtcaagggcgacgacaccttcgaggccggcattcccgaaagcttcaacgtgctcgtc
aaggaaatgcgttcgctgggcctcaacgtcgagctttcgtcctatgcggacgaagacccc
gacgaaggtccggaagcccttcccgaagccgccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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