KEGG   Sphingopyxis macrogoltabida 203: LH19_19925
Entry
LH19_19925        CDS       T04627                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
smaz  Sphingopyxis macrogoltabida 203
Pathway
smaz03030  DNA replication
smaz03410  Base excision repair
smaz03420  Nucleotide excision repair
smaz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smaz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LH19_19925
   03410 Base excision repair
    LH19_19925
   03420 Nucleotide excision repair
    LH19_19925
   03430 Mismatch repair
    LH19_19925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smaz03032]
    LH19_19925
   03400 DNA repair and recombination proteins [BR:smaz03400]
    LH19_19925
Enzymes [BR:smaz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LH19_19925
DNA replication proteins [BR:smaz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LH19_19925
DNA repair and recombination proteins [BR:smaz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LH19_19925
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LH19_19925
   MMR (mismatch excision repair)
    DNA ligase
     LH19_19925
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LH19_19925
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT Lar_restr_allev DZR_2
Other DBs
NCBI-ProteinID: ALJ15147
UniProt: A0A0P0DM68
Position
complement(4011128..4013272)
AA seq 714 aa
MTEIESLTEADAANELMRLAKTIARHSKLYHAEDAPEISDADYDALVRRNNELEAAFPNL
IRADSPNNQVGAAVEASPLAKVTHAQRMMSLDNAFSGADVEEFAARVRRFLNLGEGDIVA
LTAEDKIDGLSCSLRYEKGLLVQAATRGDGSVGEDVTPNVRTIADIPQQLAGAVPDVFEI
RGEVYMAKADFTALNARLLAEADDPEKARQFANPRNAAAGSLRQKDAGITAARPLRFLAH
GWGEVSDVPETTQFAMMKQIESWGVPVSPLLRRFEAVEDVLAHYALIEAERAELPYDIDG
VVYKVDRLDWQARLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLVPV
TVGGVVVSNVTLHNRDEIGRLGVRPGDRVVVQRAGDVIPQVVENLTRDEDRAPYMFPDHC
PVCGSEAVAEEGEVDVRCTGGLICGAQKFERLRHFVSRGALDIEGLGEKSIAEFLELGWL
DKGPADIFRLRNHRADLLGREGWKEKSVDNLFAAIEAKRQPDAARLLFGLGIRHIGAVTA
RDLLKGLGDIAVLPGKAAEIQAYLDANPQAEGESDGKFVARKMEAIKAILDVRADGIGPA
VAEALGDFFHEPHNRALWDDLLSEVSPPPYVVETRESEVSGMTVVFTGKLETMSRDEAKA
QAEALGAKAAGSVSAKTDLVVAGPGAGSKLKQASALGIRVIDEAEWAEIVAAAG
NT seq 2145 nt   +upstreamnt  +downstreamnt
atgaccgagattgaatcgctgaccgaagccgatgccgccaacgaactgatgcggctggcg
aagaccatcgcccgtcacagcaagctttatcatgccgaggacgcgcccgaaatttcggat
gccgactatgacgcgcttgtccgccgcaacaacgagctcgaagcggccttcccgaacctg
atccgcgccgacagcccgaacaaccaggtcggcgccgcggtcgaggcttcgccgctggca
aaagtgacgcacgcacagcggatgatgagcctcgacaatgcgttcagcggcgcggatgtc
gaggagttcgcggcgcgggtgcggcgcttcctcaatctcggcgagggcgacatcgtcgcg
ctgactgccgaggacaagatcgacggcctgtcctgttcgctacgctacgaaaagggcctg
ctcgtgcaggccgcgacgcgtggcgacggcagcgtcggcgaggatgtgacgcccaacgtc
cgcaccatcgccgacatcccgcaacagcttgccggcgcggttcccgatgtcttcgagatc
cgcggcgaagtttacatggcgaaggccgatttcaccgcgctcaacgcacggctgctcgcc
gaggccgacgaccccgaaaaagcgcgccagttcgccaatccgcgcaatgccgccgcgggc
tcgctgcgccagaaggacgccggcatcaccgccgcgcgcccgctgcgtttcctcgcgcac
ggctggggcgaggtaagcgacgttcccgagacgacgcaatttgcgatgatgaagcagatc
gaaagctggggcgtgcccgtgtcgccgctgctgaggcgcttcgaggcggtcgaggatgtg
ctcgcccattatgcgctgatcgaggctgagcgcgccgaactgccctatgacatcgacggc
gtcgtctacaaggtcgaccggctcgactggcaggcacgcctcggcttcgtggccaaggcg
ccgcgctgggccatcgcgcataaattccctgccgaacgcgcgcagacgacgctcgaagcc
atcgacatccaggtcggccgcaccgggaaactgaccccggtcgggcggctcgttcccgtg
accgtcggcggcgtcgtcgtgtcgaacgtcacgctccacaaccgcgacgagatcggccga
ttgggggtacgccccggcgaccgcgtcgtcgtccagcgcgccggcgacgtcatcccgcag
gtggtcgagaatctgacccgcgacgaggaccgcgcgccttacatgttccccgaccattgc
cccgtctgcggcagcgaggcggtcgccgaagagggcgaggtcgacgtccgttgcacgggc
ggcttgatctgcggcgcgcagaagttcgagcgcctgcgccatttcgtcagccgcggcgcg
ctcgatattgaggggctcggcgaaaagagcatcgccgaatttctcgagcttggctggctc
gacaaggggcctgcggacattttccgcctcaggaaccaccgcgccgacctgctcgggcgc
gaggggtggaaggaaaagtcggtcgacaatcttttcgccgcgatcgaggcgaaacggcaa
cccgacgcggcgcggctgctgttcgggctcggtatccgccatatcggtgcggtgaccgcg
cgcgacctgctcaaggggctcggcgacatcgccgttcttcccggaaaagccgctgaaatt
caggcctatctcgacgcaaacccgcaggccgaaggcgagtccgacggcaagttcgtcgcc
cgcaagatggaggcgatcaaggcgatcctcgacgttcgcgccgacgggatcgggcccgcg
gtcgccgaagcgctgggcgatttcttccacgagccgcataatcgcgccctgtgggacgat
ctcctctccgaagtctcgccgccgccttatgtggtggagacgcgagaaagcgaagtttcg
ggaatgacggtggtgttcaccggcaaactcgaaacgatgagccgcgacgaagcaaaggcg
caggccgaggcgctgggcgccaaggccgcgggatcggtgagcgcgaagaccgacctcgtc
gtcgcggggcccggcgcgggatcgaagctcaagcaggcgagcgcgctcggcatccgcgtg
atcgacgaggccgaatgggcggagattgtcgcggcggctgggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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