KEGG   Sinorhizobium medicae: Smed_5143
Entry
Smed_5143         CDS       T00555                                 
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
smd  Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:smd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smd03021]
    Smed_5143
Transcription machinery [BR:smd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Smed_5143
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF DUF134 HTH_23 HTH_24 baeRF_family3 HTH_1 Xre-like-HTH
Other DBs
NCBI-ProteinID: ABR63920
UniProt: A6UJU0
Position
pSMED02:complement(95734..96276)
AA seq 180 aa
MSNAVKDIGERLMAFLPNLRRFAISLCGSRDVADDLVQAACERALASAERFEPGTRFDAW
MFRILRNLWVDQVRRQRTAGVQDDISERHDIAGSSGEREAEARLTLKTVAEAITELPQEQ
REVLLLVCVEELSYREAAEVMGIPIGTVMSRLARARKSLAEAAGITMTAARSHVMKGVKE
NT seq 543 nt   +upstreamnt  +downstreamnt
atgagcaatgcggtgaaggatatcggtgaacgcctcatggcgttcctgcccaatctgcgc
cgcttcgccatctcgctctgcggctcgcgtgatgtggccgatgatcttgtgcaggcagct
tgcgagcgggcacttgcgagtgccgagcgcttcgagccgggtacgcgtttcgacgcgtgg
atgttccggattctacgcaacctttgggtcgatcaggtgcgccggcagaggaccgcaggc
gtgcaggacgatatttccgaacgccatgacattgccggttcatccggcgagcgggaggcc
gaagcgcggctgaccctcaagaccgttgcggaggcgatcaccgaattgccgcaagagcag
cgggaggtgctgcttctggtctgcgtcgaggagctatcctaccgcgaagccgccgaagta
atgggcattccgatcggaacggtgatgagccgcctggccagagcgcggaaaagtttggcc
gaggccgccggaataacgatgaccgccgcacgttcgcatgtgatgaagggcgtaaaagaa
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system