KEGG   Sinorhizobium medicae: Smed_6143Help
Entry
Smed_6143         CDS       T00555                                 

Definition
(RefSeq) type IV secretion system protein VirD4
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
smd  Sinorhizobium medicae
Pathway
smd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:smd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Smed_6143
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:smd02044]
    Smed_6143
Enzymes [BR:smd01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     Smed_6143
Secretion system [BR:smd02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   Smed_6143
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind DUF1657 DUF639
Motif
Other DBs
NCBI-GeneID: 5320445
NCBI-ProteinID: YP_001314706
UniProt: A6UM93
Position
pSMED02:1070183..1071829
Genome map
AA seq 548 aa AA seqDB search
MCSLAVGYCGASAYSTFRFGFDGRALMTFDILAFWYETPFYLGYTTLFFYRGLAVVVLTS
AAILLVQQMVSVRDRQHHGTARWARVDEMRRAGYLQRYSRISGPVFGKTSGPFWSDYYLT
NSEQPHSLIVAPTRAGKGVGIVIPTLLTFEGSVIALDVKGELFDLTSRARKARGDSVFKL
APLDPERRTNCYNPLLDILALPSERQFTEARRLAANLIATKGQSAEGFINGARDLFVAGI
LACIERGTPTIGAVYDLFAQPGEKYSLFARLAQETQNKEAQRIFDEMASNDTKILTSYTS
VLGDGGLNLWADPLIKAATSRSDFSIYDLRRRRTCIYLCVSPNDLEVVAPLMRLLFQQVV
SILQRSLPGKDEKHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTY
DESGKQNFLSNTGVQVFMATADDETPVYISKAIGEYTFQARSTSYTQSLTFDRNIQHSDQ
GAPLLRPEQVRLLPDKYQIVLIKGQPPLQLRKVRYYSDRALKRIFDSQTGRLPEPAPLMI
ADERFSHV
NT seq 1647 nt NT seq  +upstreamnt  +downstreamnt
atgtgttcactggcagtaggttattgtggggcaagcgcctactcaacgttccgttttggt
tttgatggaagggctttgatgacatttgacatcctcgctttttggtatgagacgcctttc
tatctgggatacacaactctcttcttctataggggtttggctgtcgtcgtcttaacgtcg
gcagccattctgctcgttcagcagatggtatccgtgcgcgatcggcaacatcacggtact
gcacgctgggctcgcgtggatgaaatgcggcgcgcgggttatcttcagcggtacagccgc
atcagtggaccggtgttcggaaagacgagcgggcctttttggtctgactactacctgacc
aatagcgagcagcctcacagcctcatcgttgcgccgacgcgcgcgggaaaaggcgtcggc
attgtaattccaacgctactaacgttcgagggctcagtgatagccctcgacgttaagggc
gagctctttgatctcacttctagggctcgcaaagcgcggggcgatagcgtgttcaaattg
gcaccgctagaccccgagcggcggacgaattgctataatcctctattggatatcctagca
ttgccgtcagagcggcagttcaccgaagcgcgtcgtttggcggcaaacctcattgcgacc
aagggacagagtgcggaaggtttcatcaacggcgcacgagatctttttgtcgccggcatt
cttgcctgcatcgagcgcggtacgccaaccatcggggccgtctacgacctctttgctcag
ccaggggagaaatatagcctttttgcgcgtcttgcgcaggagacccagaataaggaggct
cagcggatcttcgatgaaatggcgagtaatgatacaaagattctgacctcctacacttct
gtgctcggtgatggcgggctgaacttatgggccgacccgctgattaaagcggcgacaagc
cgatcggacttctcaatctacgacctgcgacgtcgcaggacatgcatttatctttgcgtc
agcccaaacgatcttgaggtggtcgcgcctctgatgcgcctgctcttccagcaggtcgtt
tcaattctgcaacgctcgctgcccggcaaggacgagaagcacgaagtgctattcctgctc
gatgaattcaagcatcttggtaagctcgaggcgattgagactgcaatcaccacgatcgcg
ggctacaagggccgttttatgttcattatccaaagtctctcggcactgaccggaacatac
gacgaatctggaaagcagaatttcctcagcaatactggtgtgcaggtctttatggcaaca
gctgacgatgagacaccggtttatatttcgaaagccatcggtgaatatacattccaagcg
cgctcaacttcctatacccaaagccttacgttcgatcgcaatattcaacactcagatcaa
ggagcacctttattaaggccagaacaggtgcgtctactacccgacaagtaccagatcgtt
ctcattaagggtcagccaccattgcaactacgaaaggtacgatattattccgatcgcgca
ctgaagcgcatctttgatagccagacgggcaggcttccggagccagcacccctgatgatt
gcagacgagagatttagccacgtctag

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