KEGG   Candidatus Karelsulcia muelleri DMIN: DMIN_00100
Entry
DMIN_00100        CDS       T01203                                 
Name
(GenBank) Transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
smh  Candidatus Karelsulcia muelleri DMIN
Pathway
smh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DMIN_00100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smh03021]
    DMIN_00100
   03019 Messenger RNA biogenesis [BR:smh03019]
    DMIN_00100
Transcription machinery [BR:smh03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     DMIN_00100
Messenger RNA biogenesis [BR:smh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     DMIN_00100
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind AAA ATPase_2 AAA_22 Spore_III_AA Mor AAA_25 AAA_18 NACHT AAA_14 AAA_24 AAA_16
Other DBs
NCBI-ProteinID: ADE35322
UniProt: D5D8F0
Position
complement(15647..16822)
AA seq 391 aa
MFEMNKLRYQNFSIKKNISEYKFEGLVISEGVLEIMPEHYGFLRFYYYNYLSSSYDDVYV
SRSQIRLFGMKTGDTIRGEVRTPKNGEKYFTLIKIFQINGRFPSSIIFLKSFEHLTPLFP
NEKFNISEKKVTISTRIVDLFSPIGKGQRGIIVAPPKTGKTTLLKEIANTISYNHPEVYL
IILLIDERPEEVTDMQRNVNGEVVSSTFDEPAEKHVKVANIVLQKAKRMVECGHDVVILL
DSITRLARAYNTVSPTSGKVLSGGVDSNALHKPKRFFGAARNIEYGGSLSIIATAIIETG
SKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAIDLVASSTRKEELLLNDNTLKTIFFLR
KRLSEMTTVEAIEYIIFRLNKTKNNKEFILM
NT seq 1176 nt   +upstreamnt  +downstreamnt
atgtttgaaatgaataaactaagatatcaaaatttttcaataaaaaaaaatataagtgaa
tataaatttgaaggactagtaattagtgaaggagtattagaaataatgcctgaacattat
ggattcttaagattttattattataattatttatcatcatcatatgatgatgtttacgta
tcacgatctcaaataagactttttggaatgaaaactggtgatactataagaggagaagtt
cgtactcctaaaaacggagaaaaatattttactttaataaaaatattccaaataaatgga
cgttttccttcttctataatttttctaaagtcttttgaacatttaactccattatttcct
aatgaaaaattcaatatttcagaaaaaaaagtaactatttctacaagaattgtagattta
ttttctcctataggaaaaggacaaagaggaattatagtagcacctcctaaaactggaaaa
acaactttattaaaagaaatagcaaatacaatatcttataatcatccagaagtatattta
ataattcttttaatagatgaaagaccagaagaagttacagatatgcaaagaaacgtaaat
ggggaagtagtatcttcaacttttgatgaaccagcagaaaaacatgtaaaagttgctaat
attgttttacaaaaagcaaaaagaatggttgaatgtgggcatgatgtagttattttacta
gattctataacacgtttagctagagcatataatactgtttctcctacatctggaaaagtt
ttatcaggaggagttgattctaacgcattacataaacctaaaagattttttggggctgct
agaaatattgaatatggtgggtctctttctataattgctacagcaattatagaaactgga
tcaaaaatggatgaagtaatatttgaagaatttaaaggtacaggtaatatggaactacaa
ttagatagaaaaattgcgaataaaagaatatatccagctatagacttagttgcttctagc
acaagaaaagaggaattattattaaatgataacacattaaaaacaattttttttctcaga
aaacgtctttctgagatgactactgtagaggctattgaatatataatatttcgtttaaat
aaaacaaaaaataataaagaatttatattaatgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (22)   

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