KEGG   Sphingosinicella microcystinivorans: SmB9_07890
Entry
SmB9_07890        CDS       T05811                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
smic  Sphingosinicella microcystinivorans
Pathway
smic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SmB9_07890 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smic03021]
    SmB9_07890 (rho)
   03019 Messenger RNA biogenesis [BR:smic03019]
    SmB9_07890 (rho)
Transcription machinery [BR:smic03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SmB9_07890 (rho)
Messenger RNA biogenesis [BR:smic03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SmB9_07890 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA ATPase_2 AAA_22 NACHT AAA AAA_25 GpA_ATPase
Other DBs
NCBI-ProteinID: BBE33131
Position
809438..810700
AA seq 420 aa
MVMHLKDLKKKTPADLVAMAEELGVEGASTMRKQDLLFSILKALADNDEQIMGGGTIEVL
PDGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRGPKDGERYFALTKLSL
INFDDPEQVRHRVNFDNLTPLYPDEKLTLDTLDPTLKDKSARVIDIIAPQGKGQRALIVA
PPRTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATR
HVQVSEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPK
RFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAI
DVGKSGTRKEELLVEKDKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNDDFFAAMNQ
NT seq 1263 nt   +upstreamnt  +downstreamnt
atggtcatgcaccttaaagacctcaagaagaaaacccccgccgacctcgttgccatggcc
gaagagcttggcgtcgagggcgcgtccaccatgcgcaagcaggatctgctgttctcgatc
ctgaaagcgcttgccgacaacgatgagcagatcatgggcggcggcaccatcgaggtgctg
cccgatggcttcggcttcctgcgctcgcccgaggcgaactatctcgccgggccggacgac
atctacgtgtctccgaatcaggtccgcaaattcggcctccgcaccggcgacacggttgaa
ggcgaaatccgcggtcccaaggacggcgaacgctatttcgcgctgaccaagctctcgctc
atcaatttcgacgatcccgagcaggtccgtcaccgtgtcaacttcgacaacctgacgccg
ctctatcccgacgagaagctgacgctcgacacgctcgacccgacgctcaaggacaagtcc
gcgcgcgtcatcgatatcatcgcgccgcagggcaaggggcagcgcgcgctgatcgtcgcg
ccgccgcgcacgggtaagaccgtcctcctgcagaacatcgcgaaggcgatcaccgacaac
caccccgaggtgttcctgatcgtgctgctgatcgacgagcggccggaggaagtgaccgac
atgcagcggagcgtgaagggtgaggtcgtttcctccactttcgatgagccggcgacccgt
cacgtacaagtctctgaaatggttatagaaaaggcgaaacgtctcgtcgagcacaagaag
gatgtcgttatcctgctcgattcgatcacgcgccttggccgtgcctacaacaccgtcgtg
ccgtcgtcaggcaaggtgctgacgggcggtgtcgacgcgaacgccctgcagcgcccgaag
cgcttctttggtgccgcgcgcaacatcgaggagggcggttcgctttccatcatcgccacc
gcgctcatcgataccggcagccgcatggacgaagtgatcttcgaagagttcaagggcacc
ggcaactccgagatcgtgctggaccgcaaggtcgcggacaagcgcatcttcccggcgatc
gacgtgggcaagtccggcactcgcaaggaagagctccttgtggagaaggacaagctttcc
aagatgtgggtgctgcgccgtatcctgatgcagatgggcacggtcgatgcgatggaattc
ctgctcgacaagatgaaggattccaagaccaacgacgatttcttcgcggcgatgaaccag
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (11)   
   Pfam (11)   
All databases (18)   

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