KEGG   Breviolum minutum: v1.2.002087.t1
Entry
v1.2.002087.t1    CDS       T04349                                 
Symbol
symbB.v1.2.002087.t1
Name
(OIST) -
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
smin  Breviolum minutum
Pathway
smin03020  RNA polymerase
smin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    v1.2.002087.t1 (symbB.v1.2.002087.t1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    v1.2.002087.t1 (symbB.v1.2.002087.t1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smin03021]
    v1.2.002087.t1 (symbB.v1.2.002087.t1)
   03400 DNA repair and recombination proteins [BR:smin03400]
    v1.2.002087.t1 (symbB.v1.2.002087.t1)
Transcription machinery [BR:smin03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     v1.2.002087.t1 (symbB.v1.2.002087.t1)
  RNA polymerase III system
   RNA polymerase III
     v1.2.002087.t1 (symbB.v1.2.002087.t1)
  RNA polymerase I system
   RNA polymerase I
     v1.2.002087.t1 (symbB.v1.2.002087.t1)
DNA repair and recombination proteins [BR:smin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      v1.2.002087.t1 (symbB.v1.2.002087.t1)
SSDB
Motif
Pfam: RNA_pol_Rpb6
AA seq 131 aa
MDDLDDDDMDDEEDVDENEPDNIEVLEEGQELNFEGDLKPIPLSELAPKAAEGPRKTTPY
LTKYERARILGARALQISMNAPVMVTLDGETDPLLIAEKELIRGVIPFVIRRFLPDNTYE
DWKVSELLFLD
NT seq 562 nt   +upstreamnt  +downstreamnt
attgttcgagagaaactgaacccctgggggtctgttgggcacagaaactgaacccgactt
tccaggtggttgtggtgccatggatgacttagacgatgatgacatggatgatgaggaaga
tgttgatgagaacgagccggacaacattgaagtcttggaagaggggcaggagttgaattt
tgaaggtgatttgaaaccaatcccattgagtgagctagcgcccaaggcggccgaagggcc
acggaagacgactccgtacctcacgaagtacgagcgtgctcgaattttaggtgcgcgcgc
cttacaaatcagcatgaatgctccagtgatggtcaccctggacggtgaaacagacccctt
gttgatcgccgagaaggagttgattcgtggcgtcattcccttcgtgattcgtcgtttcct
tccagacaacacctacgaagattggaaggtgtcggagcttctcttcttggactagcctgc
cgatgggcggcgccagggcatccggagcgttgggacatcaaattgcctgtgcggctgcga
gcgttccaaaggaaaaagtgaa

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