KEGG   Breviolum minutum: v1.2.009918.t1
Entry
v1.2.009918.t1    CDS       T04349                                 
Symbol
symbB.v1.2.009918.t1
Name
(OIST) -
  KO
K13126  polyadenylate-binding protein
Organism
smin  Breviolum minutum
Pathway
smin03015  mRNA surveillance pathway
smin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smin00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    v1.2.009918.t1 (symbB.v1.2.009918.t1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    v1.2.009918.t1 (symbB.v1.2.009918.t1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smin03019]
    v1.2.009918.t1 (symbB.v1.2.009918.t1)
   03041 Spliceosome [BR:smin03041]
    v1.2.009918.t1 (symbB.v1.2.009918.t1)
Messenger RNA biogenesis [BR:smin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     v1.2.009918.t1 (symbB.v1.2.009918.t1)
   mRNA cycle factors
    Stress granule specific factors
     v1.2.009918.t1 (symbB.v1.2.009918.t1)
Spliceosome [BR:smin03041]
 Complex C
  Other components
   Complex C specific factors
    v1.2.009918.t1 (symbB.v1.2.009918.t1)
SSDB
Motif
Pfam: RRM_1 Ion_trans PABP RRM_7 EF-hand_1 Nup35_RRM_2 EF-hand_6 EF-hand_7 EF-hand_5 RNA_bind
AA seq 1000 aa
MSRGTAAVNGALLARQSKKRALKPETQVAAVLNPSLTSGSLERIIKSSSSVEQFVISLVG
KNLDKEEEQVKSTFVDSKAFQNFIYCTILLNTLTLGLQADLQSGGWELVWFVFENIFTAV
FAIEMLLKIFFLQMGYFWNVKSKSPQYWNLLDFVIALLAIVDCWILTYQANADAPAIRVM
QLLRIIRIAKLLRLRQELVAIIEGLFSSLQCMVWIGFLLLIVIYGFSIVCRNVMGNLTNS
DFEDMINNEMHFGTLPRTMLTLFNICLIDSWSAIIWPQMLYNPWMVIPLVVFMCVTCFGL
MNALIGVIVERTTAAQQNMSSMQEEAIREMKMYMVAKLLEAIDDSDEDSSGTINLQEFRQ
VQRKPHAADIFAALNLPPGFEAKDLFALLDSDGNGVLDRYEFLLGICRLIWCDEFQSQCL
LNYAISQVREELQASDSAVPQFASLYVGDLHPDVTEAMLYEIFNSVGPVASIRVCRDSVS
RKSLGYGYVNFHNVSDAERALDTLNYSSIKGRSSRIMWSQRDPSLRKSGAGNIYVKNLDK
NIDNKALYDTFSLFGNILSCKVATDPTGNSYGYGFVHYETEEAAKQAIEKVDGMMIGEKT
VQVCHFQKRDDKGDDKENFTNVYVKNFPADWDEDKIHSTFSEYGPISSHALRKDNKGRAF
AFVAFESSEAAKAAVAAIHMKPNGEDDGGEERLGPDGHPENKIYCQRAQTKAERQAELRS
KFATMDASKGGVNLYVKNLDDSIDEATLKELFEQFGTITSSAVPLDSNGKCKGFGFVCFA
SPDEATKAVTEMHLKGKPLYVGLAEKREARQERLRQRYSMPSGGGKGMMGGKGGKGDKGG
KGGGNPNMGGMMGMMPQQMMGKAPMPKAPMMGMMGKGGQMMPGKGGGMPTMPMPMGMNPA
MMMRPMGPGGMMPPRPGGPPGGAGQLSPAALANAPPSVQKQMIGEKLFPMISKIQPEQAG
KITGMMLEMDNSELLILLDSEQQLKNKVDEALRVLQTAKN
NT seq 3406 nt   +upstreamnt  +downstreamnt
ttgtagagtccaaccatccactgaacaaaaatgtcgcgcggcacagctgcagtgaatgga
gcactcttggcgcggcaatccaagaaaagggccctgaaaccagaaactcaggtggctgct
gtgttgaatcccagtctgaccagcggatcccttgaacgtataatcaagtcttcttcaagc
gtcgaacagtttgtgatcagcttggtcggaaagaatttggacaaggaggaagagcaagtg
aaatcgaccttcgtggattccaaagcctttcaaaacttcatttattgtaccattcttctg
aatactcttacactcggccttcaggcagacttgcaaagtggtggatgggaattggtgtgg
tttgtatttgagaacatctttaccgcagtttttgccattgaaatgctcctcaaaatcttc
ttcctgcaaatgggctacttctggaacgtgaagtccaaaagccctcagtattggaacctt
ttggacttcgtcattgctttgctagcaattgtggattgttggatcctgacgtatcaggca
aacgcagatgcgcctgccattcgggtgatgcaactgctgcggatcatcaggattgcaaag
ctactccgacttcgccaagaactggtcgcaatcatagagggacttttcagctccttgcag
tgcatggtttggataggtttcctgttgctcatcgtcatctatggctttagcattgtttgt
cgcaatgtcatgggcaacttgacaaatagtgatttcgaagatatgatcaacaatgaaatg
cactttggaacgttgccacggaccatgctgacgctctttaatatctgcttgattgacagc
tggtctgcaatcatttggccgcagatgctgtacaatccctggatggtgattcctttggtc
gtcttcatgtgtgtcacatgctttggcctcatgaatgcgctcattggtgttattgttgag
cggacaacggctgctcaacagaatatgagcagtatgcaggaggaggcaattcgcgagatg
aaaatgtatatggtggcaaaactactggaagcaatcgatgactcggacgaggacagtagt
gggaccatcaacctgcaagagtttcgtcaggttcaacgtaaacctcatgcagccgacatc
tttgctgcgctcaatcttcctccagggtttgaagccaaagacttgttcgcccttctggat
agcgatggaaatggggtcttggatcgctatgaattcctgctggggatttgtcgcttgatt
tggtgcgatgagttccagagccagtgcttgttgaattatgcgatttcgcaggtaagagag
gagctgcaagccagtgacagcgcagttccccagtttgcctctctctatgtgggtgacctg
caccctgatgtgacggaggcaatgctctacgagatcttcaactccgtggggcctgtagcc
tcgatccgtgtgtgccgggacagcgtgtcccgcaagtctcttggttatggttatgtcaac
tttcacaacgtgtcggatgcagagagagctcttgacactctgaactactccagcatcaaa
ggacgatcctcccgcatcatgtggagtcagcgtgaccccagtctgagaaagagtggtgct
ggcaacatctatgtgaagaatttggacaagaacattgacaacaaggccctttacgacacc
ttcagtttgtttggaaatatcctttcctgcaaagtggcgactgatcccaccggcaattcc
tatggttatggctttgtgcactatgagactgaggaagcagcgaagcaggccattgaaaag
gtggatggcatgatgattggcgagaagacagttcaggtctgccatttccagaagagggat
gacaagggtgatgacaaggagaacttcaccaacgtctatgttaagaacttcccagctgat
tgggatgaggataagatccacagcaccttcagtgagtatggaccgatttcatcccatgca
cttcgcaaggacaacaagggccgagcctttgctttcgtggccttcgagagcagtgaggca
gccaaggcagcagttgcagctattcatatgaagcccaatggcgaagatgatggtggggag
gagcgccttggccctgatgggcatccggaaaataagatctactgccagcgtgctcagaca
aaggctgagcgtcaggcagagcttcgttccaagttcgcaacaatggatgccagtaagggt
ggcgttaacctctatgtgaagaacttggatgacagcattgacgaagcaaccctgaaggag
ctctttgaacaatttggcaccattacatcttctgccgtcccactggacagcaatggcaaa
tgcaagggcttcggatttgtgtgcttcgcatctccagatgaggccaccaaggctgttaca
gagatgcacctcaagggcaagccgctttatgtgggccttgcagagaagcgtgaagcacga
caggagaggctccgccagcgctactcgatgccatctggcggtggaaagggaatgatgggc
ggcaaaggtggcaagggcgacaagggtggcaaaggtggcggcaacccaaatatgggaggc
atgatgggaatgatgcctcaacagatgatgggtaaggcaccaatgcccaaggccccaatg
atgggaatgatgggcaaaggtggacagatgatgcccggcaagggtggaggcatgccaact
atgccaatgccaatgggcatgaaccctgccatgatgatgaggccaatgggacctggaggt
atgatgcctccccgtcctggaggtccaccaggcggagcgggacaactgagcccagctgct
ctggccaatgcaccaccatctgttcagaagcagatgattggtgagaagcttttcccaatg
atctcgaagattcagccagaacaagctggaaagatcacgggaatgatgctggagatggac
aacagcgaattgctgatcttgctggattccgagcagcagttgaagaacaaggtggatgag
gctcttcgtgttctccagactgccaagaattgaggcgatttttgccagatcggggggtgg
gggggttgaggggtggggggagtggagttggtggaaccgcaggcgtgttgttaaagtatg
ttaccgtgacaggtcaatgtaattttttgacggtttgattgattttcaaagatggtatga
tgccagcaacatgcaaaatgaagggaaggcactctggatgagtgcctcatcgacatgcca
tttcggttccacggatcgatgtgttttgcgttttcgcagcccctgtggggctgtccgtca
cgggaggctgtgccaatttaacattctggctgcccccagtctaaggtcaaggtccgctag
gaacgccaggaacttgaatgcgacaaaaaaaaacatctcagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2957)   
   KEGG ORTHOLOGY (1)   
   RefGene (2955)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (2973)   

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