KEGG T05395: 4412673

Sphingobacterium mizutaii: 4412673_00235

Entry

4412673_00235     CDS       T05395

Name

(GenBank) Eukaryotic DNA topoisomerase I, catalytic core

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

smiz Sphingobacterium mizutaii

Brite

KEGG Orthology (KO) [BR:smiz00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smiz03032]
    4412673_00235
   03400 DNA repair and recombination proteins [BR:smiz03400]
    4412673_00235
Enzymes [BR:smiz01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     4412673_00235
DNA replication proteins [BR:smiz03032]
Prokaryotic type
  DNA Topoisomerases
   4412673_00235
DNA repair and recombination proteins [BR:smiz03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      4412673_00235

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact Post_transc_reg UN_NPL4

Other DBs

NCBI-ProteinID:

SNV37664

Position

1:complement(254216..255223)

AA seq 335 aa
MEAKKPFKYVNSNSKGFSRIHNGEVFEYHDKKKVRIVDPAVLSRIHSLVIPPNWTDVWIC
PNKNGHIQATGLDNRQRKQYIYHPLWTAFQEQDKFSRLYLFGKSLPVLKKQLEKDIKRDL
CDQRFVCALAIMIIQHTSIRPGNTIYRNSNGSFGLTTLQNRHVKLHPGKVILRYRGKKGV
KQEKTFRNKRLYDKVEKILQLSGNQFLQYLDEKNIKRAIKPCHLNSYLSEIYGGEVTSKT
IRTWNACFLALLHLLETFPENTKNRNKSCRVLVSYVAHVLGNTPSVARKNYICPVILKKF
AEGSLDGWMRRYANIANRDKDTIVQKKLLMLLKEC

NT seq 1008 nt +upstreamnt +downstreamnt
atggaagcaaagaaaccttttaaatatgtaaacagcaattcaaagggattctctaggatc
cacaacggtgaggtatttgaataccacgacaaaaaaaaggtgaggatcgtggatccagcg
gtcctatctcggatccattcccttgtgatccctccaaattggaccgacgtatggatctgt
ccgaataaaaatggtcatatccaggctacgggcttggacaataggcagcgaaagcaatat
atctaccatccgctctggacagcttttcaggaacaggataaattcagcagactatatcta
ttcggaaagagcctgccagtcttgaaaaaacagttggaaaaggatatcaaaagggacctg
tgtgaccagagatttgtctgtgcactggccatcatgatcatccagcacacctccatacgg
ccagggaataccatctatagaaattccaatggttcctttggtcttaccacgctccagaat
agacatgttaaattacatccaggaaaggtaatattgagatataggggcaagaagggcgta
aagcaggagaaaacatttaggaacaaaaggctgtatgacaaggttgaaaagattttgcag
ctctctggaaaccagttcctccaatacctggatgaaaagaatatcaaaagggccataaag
ccatgccatctgaacagctatctttctgaaatatatggcggggaggtgaccagtaaaacc
attagaacgtggaatgcatgttttttggctctgttgcatcttttggaaacctttcctgaa
aacaccaagaacaggaacaaaagttgcagggtgcttgtcagttatgtcgcgcacgttttg
ggaaacacgccatcggtggcacgaaagaactacatctgtcccgttatcttaaaaaagttc
gcagagggcagtcttgacggctggatgaggaggtatgcaaacattgcaaacagggataag
gataccattgtccaaaaaaagctcttgatgctattgaaagagtgttag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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