KEGG T01095: Smp

Schistosoma mansoni: Smp_041760

Entry

Smp_041760        CDS       T01095

Name

(RefSeq) putative chromodomain helicase DNA binding protein

K20091

chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]

Organism

smm Schistosoma mansoni

Brite

KEGG Orthology (KO) [BR:smm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:smm03036]
    Smp_041760
Chromosome and associated proteins [BR:smm03036]
Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    Smp_041760

SSDB

Motif

Pfam:

SNF2-rel_dom Helicase_C Chromo CDH1_2_SANT_HL1 CHD1-like_C ResIII DUF6511 DEAD Cdh1_DBD_1 MobB

Other DBs

NCBI-GeneID:

8345585

NCBI-ProteinID:

XP_018652255

UniProt:

G4VJQ0

Position

4:21447926..21467688

AA seq 1825 aa
MVDELHVLKKRIRTLSESSRSDGSISHTEQSESSPQDDTVLSNSPPQPVRSRKQNIRELR
EEFEDYPELYGIRRSARSRKEPLRFKASEKDTTDALFREKRRNRFPSSSDSNNVTDSETD
DWNDNISTRHRTVRTRGNRVNYKSAFVDDSFDESNDEPSERSSSSIFKPINQRTSYGTVP
ILNQQTCFQKPRGPLVRKPYAPVLASRNSKSFIKSDDNNVDQIGVKEQYSEEDEDGVSGE
VNREIEWGVDDEEADVIEEILTHAIRRKGATGNPTTLYNTQLEKDLNAGFNPKQEDGELQ
FLIKWRNWSHIHSTWETESSLRNPDRGAPVAGMKKFYAYQAIMREKSERLQYVEREELET
VAYEEERDEQLLQDKMNVERIVAHSRDPETNTFDYLIKWFRLDYRFCTWESGKVIHLLYE
SAVQAYETRCNSTTLPNRKCEVLYTRPKFLPLMEQPSYLGRSEELRLRDYQLEGINWLVR
AWTRRNSVILADEMGLGKTIQTIGFLSYLFNEHQVYGPFLIVVPLSTISSWQKELQTWAP
EMNTIIYTGDHVSRQLIREHEWSTGASNNRRHQSLKFNVCVTTYEILLKDKGWLSQVNWA
FLGVDEAHRLKNDSSQLYKTLKTFETNTRLLVTGTPLQNTMKELWALLHFIMPDCFPDWE
EFEQTYSVSPDDPANKMNSEAFHNLHKTLKPFLLRRVKKDVESSLPEKIEQILRVDMTKE
QANIYRLILARNYDGLLKVTRGHKASFINIVMELKKCCNHAHLIAPPSEVDQQYLTKEDR
LRSFLKGSGKGTLLDKLLQRLKSKGHRVLIFSQMVRMLDLIADYLSLRGWGFQRLDGSIR
GEVRKQALDHFNCEGSTDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAH
RIGQTKQVSVYRFVTRESVEEKIIESATRKMVLDHLVIQRMDSAGIRSGRRGDTAKGHLL
TEILRYGAEGLFKQADEDATELEVDIDDILNRAETRDTEATVESNPANALLSSFKVVNLD
ALEEDTDIKNGNDSLNSSINTGCEKTWDQIIPSEFRGQVKAEQDRKTLVELELGPRRRRP
VKTFQAGLNVNQSSSETSESEENDKVLPTQLTEKEIRALVRAIRHFARPLERIDAIAADA
ELPDHSESELREVVDAVLKGCRTAMEAASINSNEESQKQATGGKGPVFQYGRVSVAARPL
LQSLEYLETLHLCLPSTSKEARMSYELPFTPKLVAWSCNWDNTDDVRLLAGVYEHGYDNW
ETIKLDADLGLGSKLLPVSQTERPQANHLRSRVDYLLKMLAKCHSSVSKNTEQQVVTKKR
RKEDRESNKSNQKAKTITSKANVKHTNKQIYTPINSMPKSAEFVETDDSSSESDYNKDND
DKQEENDIDNDNISNQLLKNTKQSRKSTNKSKIKSEKRDKYISELKPPTLQPLLSNHQEN
LSNVSTMIFTKKEEDEFRNMQGPIFVKCKKKFVPIKKHFKELEDLERTDEQNPVKLANVV
LQIGDHIHSIIDVYPEKEKRHAWKNYLWEFVHIFSKNSTEELRHVYRHAVKRRLKEQRKK
INDADSNFPPKHNNSLRNSNNSIDYSETTSNRHSSNRDYYSNSNNNDNSTGNAALFRRYH
TNRLSSHDRNDRHEQHGGYSHGGQNKYYNNSNNDWSSSITSSHKEFNRDRNNNSSRFNNA
FNRPPGQSNVKHHKDNGGFTSQMYSSPRVVSSHYHHQQQHNSGSYSSGHYPWTNYSSSDD
MINSSSPKMETYKYASHYPPVLSSSTLSSLPESINSTTTTTKTPSYFSSMGQCLPPPPPP
PPPLLQQQHATNQLSRDPRLSSSRR

NT seq 5478 nt +upstreamnt +downstreamnt
atggtggatgaacttcacgttcttaagaagaggattagaacactcagtgaatcttccagg
agtgacggatccatatctcatacagagcaatctgaatcttcacctcaggacgacactgtt
ttatcaaattcaccaccgcaaccagtcagatctagaaaacaaaatataagagagcttcgt
gaagaatttgaagattatcctgaactgtatggtatacgtagatctgcacgaagtcgcaaa
gagccattacgtttcaaagcatcagagaaagatacaactgatgcactttttcgagaaaag
agaagaaatcgttttcctagcagttcagatagtaataatgtaacagatagtgaaacagac
gattggaatgataatatatcaacacgacatcgtactgtaagaacacgaggaaatcgtgtc
aattacaaaagtgcttttgtagatgacagttttgatgaatctaacgatgaaccatcggaa
cgatctagttcgagtatatttaaaccaatcaatcaacgaacttcatatggcactgtacca
atactaaatcaacaaacgtgttttcaaaagccaagaggtcctttggtccgaaaaccttat
gcaccagtcttggcaagcagaaattcgaagtcattcataaaatcagatgacaataatgta
gaccaaattggcgtaaaagaacaatattcagaagaggatgaagatggtgtaagtggtgaa
gttaaccgggaaattgaatggggagttgatgatgaagaagcggatgttattgaagagata
ttaactcatgctattcgacgtaaaggtgccactggtaatcctaccactctgtataataca
caattagaaaaagatttaaatgctggttttaatcctaaacaagaggatggtgaattacag
tttcttattaaatggcgtaattggagtcatattcattcgacatgggaaactgaatcttca
ttacgtaatccagatcgaggtgcaccagttgctggtatgaaaaaattctatgcatatcaa
gcaattatgcgagaaaaaagtgaacgtttacaatatgttgaaagggaagaactagaaact
gtggcttatgaagaagaacgtgatgaacaattattacaagataaaatgaatgttgaacgt
atagtagcccatagccgtgatccagaaacaaacacttttgattatctcattaaatggttt
cgtttggattatcgattttgcacctgggaatctggaaaggttatacatttactctatgaa
tcagcagttcaagcttatgaaactcgttgtaattctaccacattacctaatcgaaaatgt
gaagtactctatacacgaccgaaatttctaccactaatggaacaaccttcctaccttgga
cgctcagaggagcttcgtctacgtgattatcaacttgaaggtattaattggttggttcgt
gcttggactcgtaggaacagtgtgattttagcagatgaaatgggattagggaaaactatt
cagactattggatttctttcatatttgttcaatgagcatcaggtatatggaccttttctt
attgttgttcctttgagtactatatcaagctggcaaaaagaactgcaaacttgggcacca
gaaatgaatactataatatatactggtgatcatgtatcacgacaattgattagagagcat
gaatggtcaactggagcttctaataacagacgtcatcaatcattaaaattcaatgtttgt
gtaactacttacgaaatcttattaaaggataaaggttggcttagtcaagtaaattgggct
tttttaggagttgatgaagctcatcgtttaaaaaatgattcaagtcaattgtataaaact
ttgaaaacatttgaaacaaatacccgtctattggttacaggaacacctttacaaaacact
atgaaagaattatgggcattattacattttattatgccggattgttttccagattgggaa
gaatttgaacagacttacagtgtttctcctgatgatccagctaataaaatgaatagtgaa
gcatttcataatcttcataaaacattaaaaccttttctacttagacgagtgaaaaaagat
gtagaaagttcattaccggaaaaaattgaacaaattctgcgagttgatatgactaaagaa
caagcaaatatatatagattaattttagcccgtaattatgatggattattaaaagtaaca
cgtggccataaagcttcttttattaatattgttatggaattaaaaaaatgttgtaatcat
gctcatttaattgcacctccatctgaagttgatcaacagtatttaactaaagaagatcga
ttaagatcatttttaaaaggtagcggtaaaggtaccttattagataaattattacaacgt
cttaaatcaaagggacatcgagttcttatctttagtcaaatggttcgtatgttagatctt
atagctgattatttaagtttacgtggttggggtttccaacgtcttgatggatcaataaga
ggtgaagtacgtaaacaagcattagatcattttaattgtgaaggttcaaccgatttctgt
tttttattgtctacacgtgcgggtggtcttggtattaatttagcaacagctgatactgtc
atcatatttgattctgactggaatcctcaaaatgatttacaagcccaagcacgtgcacat
cgtataggtcaaactaaacaagtatcagtgtatcgttttgttactcgtgaatctgtggaa
gagaagataattgaaagtgctacacgaaaaatggttttagaccatttagttattcaaaga
atggattcagctggtatccgtagtggtcgacgtggtgatacagctaaaggtcatttactt
actgaaattcttcgttacggtgcagaaggattatttaaacaagcagacgaagatgctaca
gagttggaagttgatattgatgatattctcaatcgagcagaaacacgagatacagaagct
acagtagagtctaatccagctaacgctttactctcttcattcaaagttgtaaacctcgat
gcattggaagaagatactgatattaaaaacgggaatgattcattaaattcttcaataaat
acaggatgtgaaaaaacatgggatcaaattattcccagtgagtttcggggacaagtgaaa
gcagaacaagacagaaaaactctagttgaacttgagttgggcccacgacgtaggcgtcct
gtcaaaacttttcaagcaggactaaatgttaaccaatcctcttctgaaacatcggagtct
gaagaaaatgacaaagttctcccaactcaacttacagaaaaagaaattcgcgctttggtt
cgtgcgatcagacattttgcgcgccctctggaacgtattgatgcaatagcagctgacgct
gagcttcccgatcattctgagtctgaacttcgtgaggtggtagatgctgttctaaaaggt
tgtcgaacagccatggaagcggcctccatcaattcaaatgaagagtcccagaaacaagcg
actggtggtaaaggacctgtttttcaatacggtcgcgttagtgtggctgcaagaccttta
ttacaaagtctagaatatctagaaacccttcacctctgtctaccctccaccagcaaagaa
gcacgtatgtcttatgaattgccgtttactcctaaactagtcgcgtggtcatgcaattgg
gacaatactgatgatgttcgacttttagcaggagtttatgagcacggatatgacaattgg
gaaacaatcaaactagatgctgacttaggtctcggctccaaactacttccagtttcacaa
acagaacgtccacaggccaatcatttacgatcgcgtgtggattatcttttaaaaatgtta
gctaaatgccattcatcagtcagtaaaaatactgaacagcaggtggttactaaaaaaaga
agaaaagaggacagagagtcaaacaaatcaaatcaaaaagctaaaacaatcacttcaaaa
gccaatgtaaaacatactaataagcaaatatataccccaataaattcgatgcctaaatca
gcagaatttgtagaaactgacgactcatcatcagaatcagactataataaagataatgat
gacaaacaagaagaaaatgacattgataatgataacatatcaaatcagctgttaaaaaat
actaaacaatctagaaaaagtacaaataaatcaaaaattaaatctgagaaaagagataaa
tatatttcagaattaaaacctcctacacttcaacctttattatctaatcatcaagagaat
ttatctaatgtatcaacaatgatatttacaaaaaaagaagaagatgaatttcgtaatatg
caaggtccaatttttgtaaaatgtaaaaagaaatttgtaccgattaagaaacatttcaaa
gagttggaagatcttgaacgaactgatgaacaaaacccagtaaaactggctaacgtcgtt
ttacaaattggtgatcatattcattccattatagatgtatatcccgaaaaagagaaacgt
catgcatggaaaaattatctatgggagtttgtgcatatcttttcaaagaattccactgaa
gaacttcgacatgtctacagacatgctgtgaaacgtcgattaaaagaacaaagaaaaaaa
ataaacgatgccgattccaattttccaccaaaacataataattcattacgcaacagcaat
aatagtatagattattctgaaacgacatcaaatcgtcattcttcaaatcgcgactactat
agtaatagtaataataatgataacagcactggtaatgctgcattatttcgacgatatcat
acaaatagattatcgtcacatgaccgaaatgatcgtcatgaacagcatggtggttacagt
catggtggacagaataaatattataataatagtaataatgattggtcttcttctattaca
agttcacataaagaattcaatcgagataggaacaacaatagttcacgtttcaataacgct
tttaatcgtccaccgggtcaatcgaatgtaaagcatcacaaagataatggaggttttact
tcacagatgtattcttcacctcgtgttgtctctagtcattatcatcatcagcaacagcat
aattccggtagttattcttctggtcattatccttggactaattattcatcatcagacgat
atgataaatagttcctcccctaaaatggaaacatacaaatatgcctcacattatccacct
gttttatcatcatcaacattatcttctttgcccgaatcgattaactctactaccaccact
actaaaacgccatcatatttctcatccatgggacagtgtcttcccccaccacctcctcct
cccccgccccttctacaacaacaacatgcaactaatcaactatcacgtgatcctcgactt
tcctcatcaagaagatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (82)   

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