KEGG   Selaginella moellendorffii: SELMODRAFT_235617
Entry
SELMODRAFT_235617 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
smo  Selaginella moellendorffii
Pathway
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_235617
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_235617
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     SELMODRAFT_235617
Spliceosome [BR:smo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    SELMODRAFT_235617
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    SELMODRAFT_235617
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 AAA_19 AAA_30 nSTAND3 PWI SRP54 Helicase_RecD NTP_transf_2 ABC_tran AAA_16
Other DBs
NCBI-GeneID: 9661216
NCBI-ProteinID: XP_002988866
JGI: 235617
UniProt: D8SZR1
Position
Unknown
AA seq 1040 aa
MAGEERALKTWVSDELQEIQGFSEAAVVSFVIGLAKSATSSAALASRLKENSFPPGQVTD
RLARELFARVPRKKSGLSGYQQAEIEAARYARKQEEYKLVAGDDEGNVAPSPSPAAKKQS
KHGNLRKRGKEEENEDEDVGILSKRGRRTLEEEEEVERERAREKDQREKEELEARLKERD
EASTRKVMEHKISREQEEENKRRLQAQESDEGLKVAREISRQSYLKKRQEKKLEELKDTL
IDEELLFAEVKLTAREKKEKAYKQEVFDLAMKMTKDTNDIVGYQIPEAYDDEISRVKQER
RFAVALERYKDPDPEDRAIPFAEQDAWEDYQSGKAKMKFGAADKKKADEYEFVFEDQVQF
VQADIMSGENEPMDEKESRKAAAQTEHEHILEERKKLPIYPYRQELLDAIEQYQVLVIVG
ETGSGKTTQIPQYLHEAGYTERGRIGCTQPRRVAAMSVAARVAQEMNVKLGHEVGYSIRF
EDCTSEKTKLKYMTDGMLLREFLGEPDLKSYSVMIVDEAHERTVSTDVLFGLMKDITRFR
QDLKVLISSATLDAEKFSKYFDDAPIFTIPGRRYPVDMMFTKAPEADYLDAAVVTVLQIH
ITQPPGGDILVFLTGQEEIEAAEEILKQRTRGLGSRIAELIICPIYANLPSDLQAKIFEP
TPPGARKVVLATNIAETSLTIDGIKYVVDPGFCKQKSFNPRTGMESLIVAPISKAAAMQR
AGRAGRTSPGKCFRLYTQWSFNNEMEDNTVPEIQRTNLGNIVLMLKSLGINDLMNFDFMD
PPPAETLMRALEQLYALGSLNDRGELTKLGRRMAEFPLDPMLSKMIVASDKFKCSEEIIS
IAAMLSVGNAIFYRPKDKQVHADTARMNFHSGNVGDHIALMRVYDSWKETNYSSNWCYEN
YIQVRSMKRARDIRDQLQSLLERVEIELTSNANDLEAIKKTVTAGFFYHTAQIQKNGSYK
TVKNPQVVHIHPSSGLSQVLPRWVVYNELVLTTKEYMRNVIEVKKDWLVEIAPHYYKKQD
VEDVGAGKMPRGKGRAASTA
NT seq 3123 nt   +upstreamnt  +downstreamnt
atggccggggaggaaagggcgctcaagacgtgggtgagcgacgagctccaggagatccag
ggcttctccgaggcggccgtggtgtcgttcgtcatcgggctcgcgaaatcggcgacgagc
tccgcggcgctcgcgtcgcggctcaaggagaactcgttcccgcctggccaggtaacggac
aggctcgcccgcgagctcttcgcaagggttcctcgcaagaaatcggggctcagcggctac
cagcaggcggagatcgaggcggcgaggtatgcccgcaagcaggaggagtacaagctcgtg
gctggggacgacgaggggaatgtagcgccatcgccatcgccagcggcgaagaaacaatcc
aagcatggcaatcttcgaaagcgcgggaaggaggaggagaacgaggacgaggacgtgggg
attctgtccaagcgggggcggcggacgctcgaggaggaggaggaggtggagagggagcgg
gccagggagaaggatcagcgggagaaggaggagctggaggccaggctgaaggagagggac
gaggccagcaccagaaaggtgatggagcacaagatttctcgcgagcaagaggaggagaac
aagcggcgtttgcaagcacaggagagtgacgaggggctgaaggtggcgagggagatctct
cgccagtcctacctcaagaagaggcaagagaagaagctggaggagctcaaggacacgctc
atcgacgaggagttgctgttcgcggaggtgaagctgacggcgagggagaagaaggagaag
gcgtacaagcaggaggtgtttgatctggccatgaagatgaccaaggacacgaacgacatc
gtcgggtaccagattccagaagcctacgacgatgaaatctccagggtcaagcaggagagg
cgcttcgcggtggccctggagcgatacaaggacccggatcctgaggacagggctataccc
tttgccgagcaggacgcgtgggaggactaccagagcgggaaagccaagatgaaattcggt
gccgcggacaagaagaaggctgacgagtacgagtttgtgttcgaagaccaagtccagttc
gtccaagccgatatcatgtccggcgagaacgagcccatggatgaaaaggagagcaggaaa
gctgcggcgcaaacggagcacgagcacattcttgaggagagaaagaagctgccaatctat
ccataccggcaggagctactggatgccatagagcagtaccaggttcttgtgatagtggga
gagacggggtcggggaagacgacgcagataccacagtatcttcacgaagccggctacact
gagcgtggaaggatcgggtgcactcagccccggagggtggcggcgatgagtgtggcggct
cgagtggcccaagagatgaatgtgaagctcgggcatgaggtgggctattcgattcggttt
gaagattgcacctcggaaaagactaagctcaagtacatgacagacggtatgctactgcgt
gagtttctcggcgagccggatctcaagagctacagcgtgatgatcgtcgacgaggctcat
gagcggaccgtctcgacggacgtcctctttgggctgatgaaggacatcactcgcttccgg
caagatctcaaggtgctgatctccagtgcgaccttggacgccgagaagttctccaagtac
tttgatgacgccccgatctttaccattccgggaaggcgatatccagtggacatgatgttc
accaaggctccggaggcggactacttggacgctgctgttgtgacggtgctgcagatccac
atcacgcagccccccggcggagacatcctcgtgttcctgacgggtcaggaggagatcgag
gcagcggaggagattttaaagcagagaacgaggggcttggggtccaggatagcagagctg
ataatctgtcccatctacgccaaccttccatcggacttgcaagcaaagatcttcgagccg
actccccctggagcacgaaaggtggtgcttgcgacaaacattgccgagacgtccttgacg
attgacgggatcaagtacgtggtcgaccccggcttctgcaagcagaagagcttcaacccg
aggaccgggatggagtcgctgatcgtggctccaatctccaaggcggcggcaatgcagaga
gccggacgagcagggcggacgtcccccggcaagtgcttccgcctctacacgcagtggtcg
ttcaacaacgagatggaggacaacacggtaccggagatccagcggaccaacttgggcaac
atcgtgctcatgctcaagagcctgggcatcaacgacctcatgaacttcgacttcatggat
cctccccctgcggagacgctgatgagggccctggagcagctgtacgcgctgggctcgctc
aacgatcgcggcgagctgacgaagctggggaggaggatggccgagttcccgctggacccg
atgctgtccaagatgatcgtggcgtcggacaagttcaagtgctccgaggagatcatctcc
atcgccgcgatgctctcggttggcaacgccatcttctaccggccaaaggacaagcaggtc
cacgccgacacggcccgcatgaacttccactccggaaacgttggcgaccacatcgcgctc
atgcgcgtctacgactcgtggaaggagaccaactatagctccaactggtgctacgagaac
tacatccaggtgcgcagcatgaagcgggctcgcgacatccgggaccagctccagtcgctg
ctggagcgcgtggagatcgagctgacgagcaacgcaaacgacctggaggcgatcaagaag
acggtgacggcgggcttcttctaccacacggcgcagatccagaagaacggctcgtacaag
acggtgaagaacccgcaggtggtgcacatccatcccagctcgggcctctcgcaggtgctg
ccgcggtgggtggtgtacaacgagctggtgctcaccaccaaggagtacatgaggaatgtg
atcgaggtgaagaaggactggctcgtggagatcgcgccgcactactacaagaagcaggac
gtggaagatgttggcgctgggaaaatgccccgggggaaagggagggccgcgtccacggcc
tag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (78)   

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