KEGG   Selaginella moellendorffii: SELMODRAFT_413061
Entry
SELMODRAFT_413061 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
smo  Selaginella moellendorffii
Pathway
smo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SELMODRAFT_413061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smo03021]
    SELMODRAFT_413061
Enzymes [BR:smo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SELMODRAFT_413061
Transcription machinery [BR:smo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     SELMODRAFT_413061
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 9651564
NCBI-ProteinID: XP_002972367
JGI: 413061
UniProt: D8RN79
Position
Unknown
AA seq 1444 aa
MASSKRRSSHRDRALEEATGTLIALDFRPLTSEEIIRASVYEVKTVRALQNNRFGLPNLS
DCCTSCGAKRTDASNSACPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRK
KELRTLSSLEQVASGVDAHQADIGAVPNGARAPEAEEDPEKCAVCSGPAAAVKKIFKKVG
TANVPALLLEIDGKVRREDIPPGFQSLILKDEMTPQWRSKMLDPNQVLRILKCLPRETTD
KLRDEKLPSIPAEDYFIKSLPVPPNWMRYSTNEFYFQDKTTKNLKHLLTKIKSIVYTRDE
DKISLLTEQKVMEIQAAATQCIRANPLYGNVSDEDPRYGNVSDESKPLSGLQFLRSLTGK
YCGSSARAVVIGDPALKLEEIGISARIAAGLVVLETVTSSNIISLQSYAYNNPGLKVVRG
GEVCTGRSCKKLRVGDVIHRSLKDGDQVFVNRPPTFHKHALIGLKSKVIRNNVFAVNPLI
CSPLFADFDGDTLALYLPQSLQVRAEVAELVALPKQLVSSQGGQSIIGLTQDALLGAHLM
TRKNVFLDKLDMDQLRMWCPSAKVPVPAIVKSPRKSPLWTGKQLFQMTLPTTFDSESDDG
RLIIRQGEILRTSDKSSAWLGKDGLMTTICRRYGPDRALEHLDTAQGIAVDWISERGFSV
GLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQIVSDSRFQVNSVSRPRCSSWNERV
QPVTSANEATQQAAISAFQSTMKAFERTIEEHVRENSRENSLLRMVEAKSKGSLSKMMQQ
GGCLGLQLRQGEFVYHRVKSLFPRAVENESRGYLTSSELWKSMGLVESSFLDGLDPREFF
IHSLSSRKGNDGSQQRCASFFRFLMSYMKDIRVEYDNTIRSTHGGHIFQFSYGATAEPGE
PVGLLAGTAVIEPVYDQVMSSSPQASTMLKTLQNILFSNSFKDIDRCVTLKLQKLPVQPE
WIALQVQDFLKPVTIGMLASKIWIEYSPCSEVGGQKKRVPWIGCFELRAEAMERCSLNID
TIVCHLRKQLPTSLDDPDAFIQGLHFFSRDVEVLCFFPITSSVSNYDSKQIHKHMIGTMF
RNLLQVVVKGCPRGIEFVNVKWEDELCIEVAFLSRTRGVPWTHALEACGSISHLVDWQKS
TPLSIQEVHVAFGIEAAYQYLLEKLKEFTKGSGVLRKPWKNIDANESGYEAFVKNLSGCS
PLAFAMGKSPGGVFEAAAMNREVDYLAGANELAFCGKSPSLGTGANIELFFKEDKGPVSR
FPDFESLVFSRRVVDDTVSATLSAKDREIVWARIDQRSQKLHDILRKSLTGTPVSAANEA
VILDTLKYHPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHRCLLERIKG
NTVLVQRYKKKYMKGKNGRACCEEVVPVEIFSQNNDTGLKSFLQPKVNEGFMDVIGKLCS
LKIS
NT seq 4335 nt   +upstreamnt  +downstreamnt
atggcttccagcaagaggaggagcagccatcgcgatcgcgcattggaagaggcgacgggt
acgctcatcgctctcgacttccggccgctcacatcggaggagattatccgcgcctcggtg
tacgaggtcaagacggtccgagccttgcaaaacaatcgattcgggcttccaaacttgagc
gattgctgtacttcttgcggtgccaagcgaacggatgcgtccaatagcgcttgccccggc
cattctggtcacattgagctgccggtgcttgtttatcactgggatcgcatctccgctctg
gaagcgattttaaatcgggtttgcctccattgctacagcttcaagcacaagggccgcaaa
aaggagcttaggactttaagcagcttagagcaagtggcttctggtgttgatgcgcatcaa
gcagacattggagcggtcccaaatggcgctcgggctcctgaggccgaggaagatcctgaa
aaatgcgccgtatgcagtgggccagcagcggccgtgaagaaaattttcaagaaagtgggg
actgctaatgtcccagccctcttgctggaaatagacggcaaagttcgccgcgaggacatt
cctccgggctttcaaagtctgatactgaaagacgagatgacaccacaatggaggtcaaag
atgctcgacccgaatcaggtcctaagaattttgaaatgcctaccacgagagaccactgac
aaacttcgagatgaaaagttaccttcgataccagcagaagattattttataaaatccttg
cccgtgcctccaaactggatgcgctacagtacgaatgagttctatttccaggacaagaca
acgaaaaacctgaagcacctgcttacgaaaatcaagtccattgtgtacacccgtgatgag
gacaaaatatctctattaactgaacaaaaagtcatggagattcaagctgctgcaacacag
tgcattcgtgcaaatccactgtacggcaacgtttcagacgaggatcctcggtatggcaac
gtgtcagatgaaagcaagcctttgtccgggttgcagtttcttcgaagtctaacaggcaaa
tactgtgggtcttctgctcgagccgtggtgattggtgatcctgctcttaagctcgaggaa
attggaatttctgctagaattgccgctggtttggttgttctggagacggtcacaagttcc
aacataatctccctgcaaagctacgcttacaacaatcccggccttaaagtagtcagaggt
ggtgaagtatgcacaggtagaagctgcaaaaagttacgggtaggagacgttatacacagg
agcttgaaagacggggatcaagtttttgttaacaggccaccgacgtttcacaagcatgct
ttgataggcctcaagtcgaaagtcatccgcaacaatgtttttgctgtgaacccgctcatc
tgttctccactgtttgccgacttcgatggagatacgttggctttatacttgccacaatca
ctccaagtgagagcggaggtcgcagagttggtggcacttccaaaacaattggtttcgtct
caaggtgggcaatctattatcgggctgacacaggatgcacttctaggggcacaccttatg
acacgcaagaatgtctttttagataaacttgacatggaccagctgcggatgtggtgtcca
tcagcaaaagttcctgttccggcaattgttaaatcaccgagaaagagtccgttgtggacc
ggcaaacaactctttcagatgacattgccaacgactttcgattcggaaagcgacgatggc
aggctcattattcgacagggtgagattttgagaacgtctgataagtcttcagcatggctt
ggcaaggatggcctgatgactaccatttgcagaagatatggccccgatagagctttggag
cacctagatacggctcagggaattgccgtggactggatatcggaaagaggatttagtgtt
ggtttatgtgacttctacatggctgctgacgcggtatctagaaggaagctcgaggaagaa
actttgtgtgccgtggaggaagcaaagatctcgtctttggcacatcagattgtctccgac
tcgcgctttcaagttaacagtgtcagcagaccacggtgcagcagctggaacgagcgcgtg
cagccagttacgtccgccaacgaagcgacacagcaagctgcgatctctgctttccagtcc
accatgaaagcttttgagaggactatagaggagcatgtccgcgagaacagcagggagaat
tcgctgctcaggatggtcgaagcaaagagcaagggttctttgtcgaaaatgatgcaacaa
ggtggttgcctggggctgcagctacgtcaaggcgagtttgtataccaccgtgtcaagtca
ctattccctcgagctgttgagaacgagtcaaggggctacctcacttcctccgagctgtgg
aaatcaatgggcctggtggaaagctcctttctggacggcctggacccgcgcgagtttttc
atccattctctttcttcgaggaaaggaaacgatggcagccagcagcggtgcgcgtcgttc
ttcagatttcttatgagctatatgaaggacattcgcgtcgagtatgacaacactatcagg
tccacgcacgggggtcatatttttcagttttcttatggagctactgctgaaccaggagaa
ccagtgggacttttagctgggactgcggtcatagaacctgtttacgatcaggtgatgagt
tcgtcaccacaggcttctacgatgctgaaaacgctgcagaacatactgttctcaaattcg
ttcaaagacatcgataggtgtgtcactcttaaacttcagaagcttccggttcagccggag
tggatagcattgcaagtgcaagattttctaaagccggtcactattgggatgctggcttcc
aagatttggattgaatacagtccctgcagtgaagttggcgggcagaagaaaagagtgccg
tggattgggtgcttcgagttgcgagcggaagcaatggaaagatgcagtttgaacattgac
acaattgtgtgtcaccttcgcaagcaactcccaactagcttagatgatccggatgctttt
attcaagggctacatttcttttcgagggatgttgaagtgttatgcttcttcccaatcact
tcttctgtgagcaactatgatagcaagcagatacacaagcacatgataggaacaatgttt
cgaaatttgcttcaagttgtcgtgaaaggatgtccacgaggaatagagtttgtaaatgta
aaatgggaagacgagctatgcatcgaagttgctttcttgtcaagaacccgaggcgttcca
tggactcatgcattagaggcgtgcggttcgatttcacatttggtggactggcaaaagtct
accccactcagcatacaagaagtgcacgtcgcttttggaattgaggcagcataccagtac
ttattggagaaactaaaagaatttacgaaaggttctggtgtgctaagaaaaccgtggaag
aatatcgatgctaatgaaagcggatatgaggcatttgtaaagaatttgtccggctgttca
cccttggcctttgcaatgggaaaatccccaggaggtgtgtttgaagctgctgcgatgaat
cgagaggtggattatttggctggtgcaaatgaattggcattctgtggcaagagtcccagt
cttggaacaggagccaacattgagcttttcttcaaagaggataagggacctgtttcacgg
tttccggacttcgaatcactagttttttcgagaagagttgttgacgacactgtgtcggcc
acgctcagcgcaaaggacagagaaattgtctgggcaaggatagatcaacgctctcaaaag
ctgcatgacatattaagaaaaagtttgacaggaactccggtttcagcagcaaatgaagct
gtaatcttagatactttgaagtatcacccaatgatggacagtaaagtggggtgtggtgtc
aggcatataagagttgataatcatcacagctttggcggtcgatgctttcatattgttcga
ctggatggaagtgtagaggacttttcttatcacaggtgcctgctagaaagaatcaagggc
aatacggtcttggttcaaaggtacaagaagaagtatatgaaaggaaagaatggacgagct
tgttgcgaggaggttgttccagtcgagattttctcacaaaacaacgacacaggcctcaag
tcatttttacaaccaaaagtgaatgagggttttatggatgttattggcaagctctgttct
ttaaaaatatcttga

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