KEGG   Sordaria macrospora: SMAC_03429
Entry
SMAC_03429        CDS       T01610                                 
Name
(RefSeq) uncharacterized protein
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
smp  Sordaria macrospora
Pathway
smp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SMAC_03429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smp03019]
    SMAC_03429
Enzymes [BR:smp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     SMAC_03429
Messenger RNA biogenesis [BR:smp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SMAC_03429
  mRNA degradation factors
   3'-5' decay
    Pan complex
     SMAC_03429
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T UCH ANAPC4_WD40 Methyltransf_FA
Other DBs
NCBI-GeneID: 10810842
NCBI-ProteinID: XP_003353112
UniProt: F7VW51
Position
Unknown
AA seq 1373 aa
MDSRDWTQASRCASHYHAGPASTIAFDNQDELLWIGTQKGFAGSFIGRELKRFTAFRVHP
ETDGPLRQFLFVDKGVIFLGSRSVYMAARSGVPIWSIRHESMQDLRAMSFTSKGTSEILV
AGWQNKMLVIDVNKGEVVKELPTQDHYSFLKMSRYICAATNKGTVNILDPINFTIKKQWQ
AHGAYINDLDTSNDFIVTCGGSHRQTHNTPAILDPYVKVFDLKNMSAMNPVPFAPLAAHV
RMHPRMLTTAIVVNQAGQIHVTDLLNPSNSQVCYTQPQGVVLHFDVSRTGEGKALADNKH
NTYIWGSPNKIQFTEIGIPPRLPDPPQPSLLPPDPDMLDELPLSRIGLPFYREQLFSALP
PDIISDVGAPPQQVDPNILSTLTKTEWGYIGPNKTGLQRNQYIDTRPTMKTSNTIRAPKF
LSEKAREAQAASEDHNHHLVTTETAVTTPNNDHWSLRPEAPPEYRICEIKYSKFGVDDFD
FGFFNNTQYPGLENNITNSYANSLLQVMHYTPLLRNMALQHAATACLADPCLLALNHTSN
ASVSGVLEENAKDKNPSTLVKNLTMFLFDKISQDYKGTPPISTELERTLFKLNQPPNPPD
LVKKMLETDARYQIKCMHCQHVSPRTATTFVNKLSYPTAKPNIRGMKAQRITFSQVLKAG
LENEAVNKGYCTKCQRYQNLDQRKIIFNIPAVLALCTEITTAEHRKLWSTPGWLPEEIGI
IVDQGHVYCYEGDDLKLHLNRGIHNITVYSLVGTVVNVETKSPSKNHLVATVNVGRAEPE
TKDQDRWHLFNDFSVRSISKVEALTFNSAWKMPVVVMFQVKAANHRFNMDWKTRLDTSVL
FRDNNPHALKTYELLDRETEIPGPDTVIAIDTEFIRLKEREIHIDEDGKSKTIRPISHAI
ARASVVRGEGAREGVAFIDDYIHIKETIVDYLTEWSGITPTDLDPINSQRNLVSPKTAYK
KLWVLVNLGCKFLGHGLSQDFRVINIQVPRNQVIDTSIIFMKPPSQRKISLAFLAWYLLK
EDIQQNTHDSIEDAQTALKLYRKYEEFMANGSFHDVLEALYKKGKTLNFKPPRISTGAAK
DVVGFGTVHRVSTPPVPAPGTSEGTFEITSSTASATTIGSVLSATGGVGVGMGMGGTASA
SSSMPSTPVRKPIGLGGPFTVAGGAKPTGSVTSVEMTALGASAAGAGITASAAGTGTGTA
GSANTPGYGGYGTDGAYWGGPNDMAPTSMVGGSSAFVPAKLPPGPPGPPESRFIPYRPQV
LVAEREAAAAAAAAAAAAENGSSPVVGGDGGGGTGEGSSSAVDDEWLFPAVDEGSSSSDV
LKGSFSAVTDDWEQETQGEAYSTPAITDEEEQEKQGEASAAPPAVAAAAAAAP
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggattctcgggattggacccaggcaagtcgttgtgcatcccattaccatgccggaccc
gcgtcgacgatagccttcgacaaccaagatgagctgctatggataggcacccagaagggc
tttgccggctccttcatcggccgcgagctcaagcgattcactgccttccgggtgcacccc
gagaccgacgggcccctgcgtcaatttctcttcgtcgacaagggcgtcatcttcctcggc
agccggagcgtctacatggcagcacgtagcggcgtgcccatctggagcatccgccacgag
tccatgcaggatctgcgcgccatgtccttcactagtaaggggacgtctgagatcctcgtg
gccggctggcagaacaagatgttggtcatcgacgtaaacaagggcgaggtcgtcaaggag
ctgcccacacaggaccactactcattcctcaagatgagccggtacatttgcgccgcaacg
aacaagggcaccgtcaacatattggaccctatcaacttcactatcaagaaacaatggcag
gcccacggagcgtacatcaatgatctggacacctccaacgacttcatcgttacgtgcggt
ggctcgcacaggcagacgcacaataccccggctatactagatccttacgtgaaggtcttt
gacttgaagaacatgagtgctatgaacccggtgccgtttgcgccgctggccgctcacgtc
aggatgcacccgaggatgttgacgacggctattgtcgtcaaccaggcgggccagatccat
gtgacggacctgttgaacccaagcaacagccaggtctgctacacgcagcctcagggcgtg
gtgctacatttcgatgtgtcgagaaccggagaagggaaagcgcttgcggataacaaacac
aacacttacatctggggttcgcccaacaagatccagttcacggagataggaataccgccc
cggttgccggaccctcctcagccgtcgttgttaccgccagacccagacatgctggacgag
ctacccctgagccgcatcggcttgcctttctatcgtgagcagctcttctcggccttgccg
ccggatattatctccgatgtgggcgcgcctccgcagcaggtcgatccgaacattttgagc
accttgaccaagaccgagtggggatacattggccccaacaagacgggcttgcagagaaac
cagtacatagatacccggcctaccatgaagacttccaatacgatacgggcgccaaagttc
ctgagtgaaaaggctcgcgaggcacaggctgcctcggaagatcacaaccaccaccttgtg
acgaccgagacggcggtgacgacgccgaacaacgatcattggagtttgaggccggaggca
ccacctgaatataggatatgcgagattaagtacagcaagtttggtgtggatgattttgac
tttggcttcttcaacaacacacaataccctggcttggagaacaacataacaaactcctac
gccaactccctactgcaggtcatgcactacacccctctgttgcgaaacatggcacttcaa
cacgctgctacggcctgtctagctgatccgtgtctgttagctcttaatcataccagcaac
gcctctgttagtggtgtcctcgaggagaatgccaaagacaagaaccccagcacgctggtg
aagaacctcaccatgttcctttttgacaagatcagtcaggactacaagggcacccctcca
atttctaccgaactcgagaggaccttgttcaagcttaaccaacctccgaaccctcctgat
ctggtcaagaaaatgctagagaccgacgcaaggtaccaaatcaaatgtatgcactgccaa
catgtcagtccaaggactgcgacgacatttgtcaacaagctctcctacccgacagcaaaa
ccaaacatccgcggtatgaaagcccaacgcatcaccttctcgcaagtgctcaaggccgga
ctcgagaacgaggctgtaaataagggttattgcaccaagtgccagcgctaccaaaacctc
gaccagcgcaaaattatcttcaacatcccggctgtcttggcgctctgcactgagattacc
actgctgagcatcgcaagctgtggtctacccccggatggctgcctgaggagattggtatc
atagttgaccaaggccatgtttactgctatgaaggggatgacctcaagttgcacctcaac
agggggatacataacattacggtatattcgctggtgggtacggtggttaatgttgaaacg
aagagtccgtccaagaatcacttggtggctactgtcaatgttggacgagcagagccggag
accaaggaccaggatcgctggcacttgttcaatgacttctcagtacgaagcatttccaag
gtggaggccctcactttcaatagcgcttggaagatgccggtcgtcgtcatgttccaggtc
aaggctgccaaccatcggttcaatatggactggaagacacgtctggatacctccgtcctc
ttcagggataacaacccacacgctctcaagacatacgagctactcgaccgggagacagag
atccccggtcccgacactgtcatcgcgattgatacggaatttattcgacttaaggagaga
gagatccatattgacgaagacggaaaatctaaaaccatccggcccatctcgcacgccatt
gcgcgtgcctcggtggtccggggcgaaggtgccagagaaggcgttgcgttcattgacgat
tacatccacatcaaagagaccatcgtcgactacctcaccgaatggtccggcatcacgccc
actgacttggaccctatcaactcacagcgcaatctggtttctcccaaaactgcttacaag
aagctctgggtcctcgtcaacttgggctgcaagttcctcggccacggcctcagccaagat
ttccgcgtcatcaatatccaagtgcctaggaatcaggttatcgatacgtctatcatcttt
atgaagccgccttcccagcgcaagatctcgctcgctttcttggcctggtatctgctcaag
gaagacatccaacagaacacccatgactcaatcgaagatgcccaaacagctctgaagctg
tacaggaagtacgaagagtttatggctaacgggagcttccacgacgtcctggaagcgctc
tacaagaagggcaaaacactcaacttcaagccgccacgtatttccaccggcgcagccaag
gatgtcgttggtttcgggacagtccaccgcgtcagcacccctcccgttcccgcacccgga
acgtccgagggaacgtttgaaattaccagctcaacagcatcagcaacaacaatcggtagc
gtcctctccgccaccggcggcgtgggagtaggaatgggaatgggaggaaccgcaagcgcg
agcagtagtatgccctccacacccgtcaggaaacccatcggtctcggcggaccgtttacc
gttgctggtggcgcaaagccaacaggctcggttactagcgttgaaatgactgctctcggc
gctagtgctgccggtgcgggaatcacagcgtcagcggcaggaacaggaacaggaacagcg
ggtagtgctaatactcctggatacggtggttacggaacggatggcgcgtattggggcgga
ccaaatgatatggcgcctacgagcatggtgggaggatcatcagcgtttgtacctgcgaag
ctaccgccgggaccgccgggaccgccggagtcgaggtttattccttatagaccgcaggtg
ttggttgcggagagggaggcggcggcggcggcggctgctgctgctgctgctgcggagaat
ggttcttctcctgttgttggtggtgatggaggtggtggtaccggtgaagggtcttcttct
gctgtcgacgacgaatggttgtttcctgctgtcgacgaaggctcttcttcttctgatgtc
ctgaaaggttctttttctgctgtcacggatgattgggaacaggaaacgcaaggggaagca
tattctactcctgctatcacagatgaagaagaacaggagaagcaaggagaagcctctgct
gctcctcctgctgtagcagcagcggcggcggcggcgccttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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