KEGG   Sordaria macrospora: SMAC_07821
Entry
SMAC_07821        CDS       T01610                                 
Name
(RefSeq) uncharacterized protein
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
smp  Sordaria macrospora
Pathway
smp03013  Nucleocytoplasmic transport
smp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    SMAC_07821
   03015 mRNA surveillance pathway
    SMAC_07821
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smp03019]
    SMAC_07821
Enzymes [BR:smp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     SMAC_07821
    5.6.2.5  RNA 5'-3' helicase
     SMAC_07821
Messenger RNA biogenesis [BR:smp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     SMAC_07821
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     SMAC_07821
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD UvrD-helicase Helicase_RecD Viral_helicase1 SLFN-g3_helicase PIF1 nSTAND3 AAA_22 SRP54 ATPase AAA_16 PhoH AAA_10 Mg_chelatase
Other DBs
NCBI-GeneID: 10803729
NCBI-ProteinID: XP_003346344
UniProt: F7VZ57
Position
Unknown
AA seq 1093 aa
MANMEVSFTHLGNHLVSDSAAAIKAGGSDELSNIDPDENLLLGVYGGRGPRGNARRRHDD
DDNETEVLDDDDDESLASVPVDGMKSLKLDAPVEEKELPPHACAYCGIHSPSSVVKCLAC
NKWFCSAKGSGFSSHIVNHLVRARHKEVQLHPESSLGDTVLECYNCGTKNVFILGFIPAK
SDTVVVLLCRQPCGASTSTKDMSWDISRWQPLIEDRAFLSWLVTPPTDAEQLRARHLTPP
MIAKLEEMWKEAPNATVADLEKSAGVDDDPHPVLLKYDDPYHYQNIFGPLVKMESDYDKK
LKEAQSEDGLQVRWHLGLNSKHVASFILPKIESGDVKLAVGDEMRLKYKGELRPPWEGVG
YVIKIPNNQSDEVEVELRKSANDKSVPTECTHNFSADYVWKATSYDRMQLAMKTFAVDEM
SVSGYIFHKLLGHEVQVAPTKITMPKKFHVPGLPELNASQIAAIKQVLSNPLSLIQGPPG
TGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESS
VSFLALHEQVRMNTTNKELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADVVCC
TCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKA
AKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYDGSLQNGVTAAERLRKDV
DFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGVITP
YEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKEFIVLSCVRSNENQGIGFLSD
PRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCLVEGPLTNLQPSLLQFGR
PRQAYRPQRSHTQHVASGASNGRYVAPLTAGSVRDYETGSMISYIPDDVSSIHSSALGGA
GLSSAYPTMFSNFHPEAWPGLPGAGPNGRPGAKGRGRATESIAGESVANSEFTDATSSVI
GSKGIGQGGASLGAGLSEAIGSARPTSYSQSDRLKQYVESNGRMGVGNGYRRYDDDEKSV
STAFASQIGTGFD
NT seq 3282 nt   +upstreamnt  +downstreamnt
atggccaacatggaggtgtccttcacacatcttggaaaccacctggtttccgattctgct
gccgccatcaaggccggtggctccgacgagctttccaatatcgatcccgatgaaaacctt
ctccttggtgtctacggtggacgtggtccccgtggcaacgccagacgccgccacgatgac
gacgacaacgaaaccgaggtcctcgacgacgatgacgacgagagtttggccagcgttccg
gtcgacggcatgaagagcctcaagctggatgcccctgtggaggagaaggaactgcctccc
cacgcttgcgcctactgtggcatccactcgccctccagcgtcgtcaagtgccttgcctgc
aacaagtggttctgcagcgccaaaggaagcggcttctcgtctcacattgtcaaccatctc
gttcgagctcgccacaaggaagtccagctgcaccccgagtcttcccttggcgataccgtc
ctcgaatgctacaactgcggtaccaagaatgttttcatcctcggttttatccctgccaag
tcagacaccgttgtggtcctgctttgtcgccagccgtgtggtgccagtacgtcgaccaag
gatatgagctgggatatatctaggtggcagcccttgatcgaggacagggcgttcctcagc
tggctcgttacccctcccacagatgccgagcagcttcgtgcccgccaccttacgccgcct
atgattgccaagctcgaggaaatgtggaaggaggctcccaacgcgactgttgccgatctc
gaaaagagtgctggagttgatgatgatcctcacccggtcttgcttaagtacgacgacccc
tatcattatcagaacattttcggccctctcgtcaagatggaatccgattacgacaagaag
ctgaaggaggcacagtccgaggatggccttcaagttcgctggcatcttggtctcaacagc
aagcatgtcgccagcttcatccttcccaagatcgagtccggtgatgtcaagctggccgtg
ggtgacgagatgcgtctgaagtacaagggagagctgcgcccgccttgggagggtgttgga
tatgtcatcaagattcccaacaaccagtccgatgaggttgaggtggaacttcggaaatct
gccaatgacaagtccgtcccgacagagtgcacacacaacttctcggctgactatgtgtgg
aaggcaacctcctacgaccgcatgcagctggccatgaagacatttgccgtcgacgagatg
agtgtttctggttacattttccacaagctgttgggccacgaggttcaagttgccccaacc
aagattacaatgcccaagaagttccatgttcctggtcttcccgagctcaatgccagccaa
atcgccgccattaaacaggtcttgtccaatcctctcagtcttatccagggtcctccggga
actggaaagaccgtcacttcggccaccatcatctatcatcttgccaagatgagcaacagc
caggttctcgtttgcgctccgtctaacgtcgccgttgaccagctctgcgagaggatccat
agaacaggcctgaaggtcgttcgcttgaccgccaagtcccgtgaggatgtcgagtcctcc
gtcagctttctggctctccatgagcaggttcgcatgaacactaccaacaaggagcttgat
ggcctcgtcaagctcaagaccgagaccggcgagctttcgtctcaggatgaaaagaggttc
aagcagctgacgcgccaggctgagcgtgagattctgcagaacgctgatgtagtctgctgc
acttgtgttggtgccggagatccacgactttctaagatgaagttccgcaatgtgctcatc
gacgaatctacacagtctgccgaacccgagtgcatgattccgctcgtccttggatgtaag
caagttgtcttggttggtgaccacaagcagcttggccctgtcatcatgaacaagaaggct
gccaaggctggcctcaaccagtcgctcttcgagaggttggtcaagctccagtttaccccc
attcgcctgaaggttcagtatcgtatgcatccttgcctctctgagttcccctccaacatg
ttctacgatggatcgttgcagaacggcgtcaccgccgccgagagactccgcaaggatgtc
gatttcccctggccggtccctgagactcccatgatgttctggtcaaacttgggcaacgag
gaaatctcggcctcaggcacgtcgtacctcaaccggactgaggccgccaacgtcgagaag
attgtcacacgcttcttcaaggccggtgtcaagcctgccgacatcggtgtcattacaccg
tacgagggccagcgtagctacatcgtcaacaccatgcagaacaccggcacgttcaagaag
gaatcctacagggaagttgaagtcgcttccgtcgatgccttccagggccgagagaaggaa
ttcattgtgctgtcctgcgttcgctccaacgagaaccaaggcattggtttcctttcggat
ccccgtcgtcttaacgtcgccctcactcgtgccaagtatggtctggtgattattggtaac
cccaaggttctgtgcaaacatgagctctggcaccatcttctcgttcacttcaaggacaag
aagtgtctcgtcgaaggccctctcacaaacctccagccttcccttcttcagtttggcaga
cctcgccaggcctaccggccgcaacgcagccacacccaacatgttgccagcggcgcgtct
aatggccggtacgttgctcccttgactgccggctccgtcagagattacgagactggttcc
atgatctcgtacatcccggatgacgtctcatccatccatagctccgctctgggaggtgcc
ggtttgagctctgcttaccccacaatgttttcaaactttcaccctgaggcgtggcctggt
ctgccgggtgctggtcccaatggacgcccgggcgctaagggccgtggtcgtgcgacagag
agtatcgcaggcgagagcgtcgccaacagcgagttcaccgatgctacttccagtgttatc
ggcagcaagggtatcggacagggcggcgcgagtctcggtgctggccttagcgaggccatc
ggatctgcccgccctacttcctacagccagagcgatcgccttaagcagtatgtcgagagc
aatggtcgcatgggagtcggcaacggatatcgccgttatgatgacgacgagaagagcgtc
agcactgcttttgccagccagatcgggacaggttttgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (36)   

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