KEGG   Serratia marcescens WW4: SMWW4_v1c35550
Entry
SMWW4_v1c35550    CDS       T02448                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
smw  Serratia marcescens WW4
Pathway
smw03030  DNA replication
smw03410  Base excision repair
smw03420  Nucleotide excision repair
smw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SMWW4_v1c35550 (ligA)
   03410 Base excision repair
    SMWW4_v1c35550 (ligA)
   03420 Nucleotide excision repair
    SMWW4_v1c35550 (ligA)
   03430 Mismatch repair
    SMWW4_v1c35550 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smw03032]
    SMWW4_v1c35550 (ligA)
   03400 DNA repair and recombination proteins [BR:smw03400]
    SMWW4_v1c35550 (ligA)
Enzymes [BR:smw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SMWW4_v1c35550 (ligA)
DNA replication proteins [BR:smw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SMWW4_v1c35550 (ligA)
DNA repair and recombination proteins [BR:smw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SMWW4_v1c35550 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SMWW4_v1c35550 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     SMWW4_v1c35550 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SMWW4_v1c35550 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc zf-NADH-PPase
Other DBs
NCBI-ProteinID: AGE19345
Position
complement(3839602..3841623)
AA seq 673 aa
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSDRAQRRTGSEEVLAFYRQVERDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPHDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGE
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggaatcgataatccaacaaatcaatcaactacgagccacactgcgccatcatgaatac
cagtatcatgtgctggatgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggagagcgcgcatccggagctgatcaccgccgattcgccgacccag
cgcgtgggcgcggcgccgctggcggcgttcgaccaggtgcgtcacgaagtgccgatgctg
tcgctggacaacgtgtttgacgaagagagcttcctggcgttttacaagcgcgtgcaggac
aggctcaaaagcagcgatccgctgaccttctgctgcgagctgaagctggacggcctggcg
gtcagcctgctgtatgaagacggcgagctggtgcgcgcggcgacgcgcggcgacggcacc
accggcgagaacatcacctccaacgtgcgcaccattcgagccatcccgctgcgcctgacc
ggcgacaacatcccgcgccggctggaagtgcgtggcgaagtgttcatgccgcaggccggg
tttgaacagatgaacgaagaagcccggcgcaaagacggcaaggtattcgccaacccgcgc
aacgccgccgccggctcgctgcgccagctcgatccgcgcattaccgccaaacgcccgctg
accttcttctgctatggcgttggcctgctggaaggcggcgagctgccgcgcagccacttt
gagcgcctgatgcagttcaaggcctggggcctgccggtcagcgatcgcgcccagcgccgc
accggcagcgaggaagtgctggcgttctatcgccaggtcgagcgggaccgcgcacagctc
ggtttcgatattgacggcgtggtgatcaagattgacgacatcgatctgcaggaaacgctg
ggcttcgtggcgcgtgcgccgcgctgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtggtgcgcgaagtggagtttcaggttggccgcaccggcgcgattacgccggtg
gcgcgccttgagccggtgctggtggccggggtgaccgtcagcaacgccaccttgcacaac
gccgatgaaattgagcggttggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggcgtgctggaagaccgtcggccgcatgatgcgcgc
gaagtggtgttcccgctgcactgcccggtgtgcggttccgacgttgagcgcgtggaaggc
gaggccgtggcgcgctgcaccggcggtcttatctgcggcgcgcagcgcaaagaggcgtta
aagcatttcgtttcccgccgcgcgctggacgttgaaggcatgggcgacaagatcatcgag
cagctggtggacaaggagtacgtgaagaacccggccgatctgttccggctgtccgccggc
attctgaccggcctggatcgcatggggccgaaatcggcgcagaatctggtcaacgcgttg
gagaaatccaagcagaccaccttcgctcgtttcctgtatgcgctcggcattcgcgaggtc
ggcgaagcgaccgccgccaacctggccgcgcatttcggatcgctcgagaagctgttcgcc
gccgacattgaggcgctgaaagaggtgccggatgtcggcgaagtggtggccaaacacacg
cgcaacttcctcgatgaagcgctcaatcagcaggtgatcaacgagctggtgggggccgag
atcggcatccactggccggcgccggtggtggtggtggcggaagagatagacagcccgttc
gccggcaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgacgaggccaaa
gatcgcctgacggcgctgggcgccaaggtcagcggcagcgtgtcgaagaaaaccgatctg
gtgatcgccggcgaggcggccggctccaagctggcgaaggcgcaggagctgggtatcgcc
gtgatcgacgaagcggagatgatccgcctgctgggtgagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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