KEGG T01885: SM11

Sinorhizobium meliloti SM11: SM11_chr2248

Entry

SM11_chr2248      CDS       T01885

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

smx Sinorhizobium meliloti SM11

Pathway

smx03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:smx00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SM11_chr2248 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smx03019]
    SM11_chr2248 (rne)
   03009 Ribosome biogenesis [BR:smx03009]
    SM11_chr2248 (rne)
Enzymes [BR:smx01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SM11_chr2248 (rne)
Messenger RNA biogenesis [BR:smx03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SM11_chr2248 (rne)
Ribosome biogenesis [BR:smx03009]
Prokaryotic type
  rRNA processing factors
   SM11_chr2248 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG

Other DBs

NCBI-ProteinID:

AEH79505

UniProt:

F7X2U7

Position

2224603..2227377

AA seq 924 aa
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV
AEVVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKADEEAVAPESGPSEDGEGDKN
EMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPRKQ
YRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQ
DRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCL
VYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFS
RSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAA
EEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEM
SRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDI
ALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEPEP
EDEEEVLIEEESDEEEVEEIAAERQDQKKGQTDEQGGRKRKRRRRRRGKGAGQGADEAFA
DAADAAEDETGDEAAVDDAEDEVDATDALNGDSEQKRKRRRRGKRGGRRSRQDELADAEG
ETGMAADAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPAKPRRSRKKAVK
AEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAIATEPVVTS
SKGEGEEEPTKPKKGGWWQRRGFF

NT seq 2775 nt +upstreamnt +downstreamnt
atggcagagaaaatgcttatcgatgcgtctcactcagaggagacgcgcgtcgttgtcgta
cgcggaaaccgcatagaagaattcgatttcgaatcggaacataagaagcagatccgcggc
aatatctacctggcgaaggtaaccagagtggagccgtcgctccaggcggccttcgtcgat
tacggcggcaatcgccacgggtttctggccttcgccgaaatccatcccgactactaccag
attcccctcgccgatcgtcaggccctgttgaaggcggaagccgaagaggctcgccgcgac
gatgacgagccgaacgacaccgtggcggaacagaaattcgcgccggctggcgatacggtt
gccgaagtcgtggcacaggccgaagccgccgaggcagccggagaagccgctgaggccgct
gcggagaagccgaaggccaaggccaagccgaagcgtacccgccgcgcgaagccgaaggcc
gacgaagaggccgtggcgcctgaaagcggcccgtcggaagacggcgaaggcgacaagaac
gaaatggccgcggtggtcgataccgactcgatctccgaggatatcgacgcgcgccgtcag
cgtgacgacgacgatgacgacgacaatcacgacggcgaaaaggaaatcatcgaatccgtc
ggcgccgaagatgccatggaagaggtggcggatcgtcatatccgcaagccgcgcaagcaa
taccgcatccaggaagtgatcaagcgccggcagatcctgctggtgcaggtcgcaaaggaa
gagcgcggcaacaagggtgcggcactcacgacctatctttcgctcgccggccgctactcc
gttctcatgccgaacacggcgcgcggcggcggtatttcgcgcaagatcaccaacctgcag
gaccgcaagcgtctgaaggagatcgcccgcggtctcgacgtgccgcaggggatgggtgtg
atcctgcgcaccgccggagccaatcgcacgaaagtcgagatcaagcgcgacttcgaatat
ctcatgcgcctgtgggagaacgtccgcacgctgacgctgaactcgactgccccctgcctc
gtctacgaggagggcagccttatcaagcgatcgatccgcgacctctacaacaaggacatc
agcgagatcgtcgtttcgggcgaggaaggctacaaggaagccaagggcttcatgaagatg
ctgatgccgagccacgcaaaggtcgtgcagccctatcgcgacgtgcatccgatcttctcc
cgctccggcatcgaagcacagctcgatcgcatgctgcagccgcaggtgacgctgaagtcg
ggcggctacatcatcatcaaccagaccgaagctctggtttccatcgatgtgaactccggt
cgttcgacgcgcgagcactcgatcgaggatacggctctccagacgaatctcgaggcagcc
gaggaagtagcgcggcaattgcgccttcgcgaccttgccggcctgatcgtcatcgacttc
atcgacatggaagagaagcggaacaaccgctccgtcgagaagaagctcaaggattgcctg
aagaacgatcgtgcccgtatccaggtcggccgcatctcgcatttcggcctgctcgaaatg
tctcgccagcgcatccgcgcctcggtgctggaaagcacgatgcagacctgcccgcactgc
aacggcacgggccacattcgctcgcaatcctccgttgccctgcatgtcctgcgcggcatc
gaggaacatctgctcaagaacaccacgcacgacatcagcgtgcggacgacacccgatatc
gcgctctacctgctcaatcagaagcgcagttcgatcacggactacgagcagcgcttcggt
gtctccatcttcatcgaagcggacgctcatgtcggtgcgcagcacttcgcgatcgatcgc
ggtgaaccggtcgaaaatccggtgaggatcgaccagatcctgcagttcgagccggagccg
gaagacgaagaagaggtcctcatcgaggaggagtccgacgaagaggaagtggaagagatt
gctgccgagcgtcaggaccagaaaaaggggcagaccgacgaacaaggcggccgcaagcgc
aagcgtcgtcgccgccggcgcggcaagggtgcgggtcagggggcggacgaggccttcgct
gacgccgccgacgcggctgaggacgagaccggcgacgaagccgccgtggacgatgccgag
gatgaagtcgacgctacggatgccctgaatggcgatagcgagcagaagcgcaagcgtcgc
cgccgcggcaagcgtggcggccgccgcagtcgtcaggacgaactggccgatgccgagggc
gagaccggcatggctgcagacgccggcgaaggagccggcgacgacgcagaggcggaagtc
gccccagccgcggcagccgaggagacgtcaccggatatcgcggcagccgctgccgtcgag
gcagcagcggaggagccgaaaccggcaaaaccccggcgcagccgcaagaaagcagtcaag
gccgaggagccggccgagagtgtcgatgaagtagccgagaagaccgtcgaggcccaaccc
gaagcaaccgaagccgcccccgaggccgtggaggaagctgttgccgatctggaaggcgca
aagcccgcgcgcgcaaaccgggatctgtcggcgatcgctaccgagccggtcgtgacgtcc
agcaagggcgagggcgaagaggagccgacaaaacccaaaaagggcggctggtggcagcgc
cgcggcttcttctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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