KEGG   Stenotrophomonas maltophilia D457: SMD_2199
Entry
SMD_2199          CDS       T02061                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smz  Stenotrophomonas maltophilia D457
Pathway
smz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SMD_2199
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smz03400]
    SMD_2199
Enzymes [BR:smz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SMD_2199
DNA repair and recombination proteins [BR:smz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SMD_2199
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: CCH12740
Position
complement(2453851..2456400)
AA seq 849 aa
MSLVEYRRKRRFDQTKEPEPGKALPKGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYAAFEGEIPKGQYGGGHVAQFDHGVWATQGDPEAQLAK
GHLRFELFGTKLKGGWHLVRSGRPARQPQWLLFKDDDEFASDIEADDLLGDVAEAPPEDL
KRAGAGKAAKKRLTAVPARRARRKNWAKKALALSKAKRAAAPSGPFEPQLAKLGEAPPQG
GQWVHEIKWDGYRILATVAEGNVQLWSRNALEWTAKLPEIRDAIAALGLRSAALDGELIA
GAGTKEDFNLLQATLSGEKQGVLTYALFDLLHLDGVDVADAPLLERKTLLQSVLEGQGSP
LAFSSHVQGDGDQAYRLAGERHFEGIISKRADRSYHSGRSEDWRKTKQLASDEFAVVGYT
APKGSRTGFGSLLLARPDATHGWLYAGRVGSGFSDELIGDISKRIKGGGGRKPTAYVPTQ
DTDLRAATWFEPRFVVEVFYRGIGGQQLLRQASLKAVRADKDIADLADSDRAGAAPAAAR
SQAPARRGRRVERAPATDRAPPVLSSPGKILFPGDGYTKQDVWDYYAAVMEHLLPEVVDR
PLSIIRCPSGTAKPCFFQKHHTAGLALVDSVRLKQESGINAHYLVVRDAASLLELVQFNA
LEFHPWGSHAEAPDSADRVVFDLDPGPDVPFAEVKKAATDIRKLLAQLELESFLRVSGGK
GLHVVVPLNPGCDWDLTKRFAKGFADALAQSEPQRFLATATKSLRNKRIFVDYLRNGRGA
TAVASYSLRARPGAPVALPIAWGDLAKLKRADAFTIKDVPAKLRRRRKDPWAGIAEVKQN
LARWARADP
NT seq 2550 nt   +upstreamnt  +downstreamnt
atgtccctggtcgagtatcgccgcaagcgtcgttttgaccagaccaaggagcccgagccg
ggcaaggcgctgccgaaaggccagcgcgccattttcgtggtgcagctgcatcatgccagc
cgcaggcactatgacttccgcctgcaggttggcgatgcgctgaagagctgggcggtgccc
aaaggccccagttacgacccgaaggtcaagcgcatggcggtggaagtggaagaccacccg
gtggactacgcggcgttcgagggtgagattcccaagggccagtacggcggcggccatgtc
gcccagtttgaccacggtgtatgggccacgcagggcgatccggaagcccagctcgccaag
ggccatctgcgcttcgagctgttcggtaccaagttgaaaggcggctggcatctggtccgg
tcgggaaggcccgcgcgccagccacagtggctgctgttcaaggacgacgacgaatttgcc
agcgatatcgaggcagacgatctgctgggggacgtcgctgaagcgccaccggaggatctg
aagcgtgccggcgctggcaaggccgcgaagaagcggctgacggcggtacctgccagacgc
gcccggagaaagaactgggcgaagaaggccctggcgctcagcaaggcgaaaagggcggca
gcgccgtccgggccgtttgagccgcagttggccaagctgggcgaagcgccgccccagggc
gggcagtgggtgcatgagatcaaatgggacgggtaccgcatccttgctacggtggctgag
ggcaacgtgcagctgtggtcacggaacgcgctggaatggaccgccaaacttcccgaaata
cgtgatgcgatcgcggccctgggcctgaggtcggcggcactggacggcgagctgatcgcc
ggcgccggcaccaaggaagacttcaacctgctgcaggccacgctttccggcgagaagcaa
ggcgtcctgacgtatgcgctgttcgatctgctgcatcttgatggcgtggatgtggccgat
gcgcccctgctggagcgcaagaccctgctgcaatcggtgctggaggggcagggcagccca
ttggcattcagttcgcatgtacagggggatggcgaccaggcctatcgtctggccggtgag
cggcacttcgagggcatcatttccaagcgcgccgatcgcagctaccacagcggccgcagc
gaggactggcgcaagacgaagcagctggccagcgacgagttcgcggtggtgggctacacc
gcacccaaaggcagccgcaccggctttggttcgctgctgctggcccggccagacgcaacg
catggctggctctacgcagggcgcgtcgggtccgggttctcggatgaactgattggcgac
atcagcaagcgcatcaagggcggcggcggccgcaagccaaccgcgtacgtgcccacgcag
gacaccgatctgcgcgccgcgacctggttcgaaccgcgtttcgtggtggaggtcttctac
cgcggaatcggtgggcagcaactgttgcgccaggcgtcgctgaaggcggtgcgggcggac
aaggatatcgccgacctcgccgattccgatcgcgccggagcggccccggccgctgcgcgg
tcgcaagcgcccgcgcggcgtgggcgccgggtggaaagggcgccggcaacggatcgcgcg
ccccccgtgctgtcgtccccaggcaagatcctgtttcccggcgacggctacaccaagcag
gacgtgtgggattactacgcagcagtgatggagcacctcctgcccgaggtggtggatcgt
ccgctgtcgatcatccgctgccccagtggcaccgcaaagccctgcttcttccagaaacac
catacggccgggctggcgctggtcgattcggtaaggctgaagcaggaaagcggcatcaac
gcccattacctggtggtgcgggacgcagccagcctgctggaactggtgcagttcaacgcg
ttggagttccacccttggggcagccacgccgaggcgcccgacagtgccgaccgggtggtg
ttcgatctggatcccggaccggatgtgccctttgccgaagtcaagaaagcggcaaccgac
atccggaaactgctggcgcagctggaactggaatcgttcctgcgagtctccggcggcaag
ggcctgcacgtggtcgtgccgctcaacccagggtgcgattgggacctgaccaagcgtttt
gcgaagggtttcgccgatgcattggcacagtccgaaccgcagcggttcctggcaaccgcc
accaagagcctgcgcaacaagcggatcttcgtcgactatctgcgcaatgggcgcggtgca
acggcggtcgcgtcctattcgttgcgcgcccggccgggcgcgccggtggcactgccgatc
gcctggggtgatctggcgaaactcaagcgcgccgacgccttcacgatcaaggacgtaccc
gcaaagctcagacgtcgccgcaaggacccttgggccggcatcgcggaagtgaagcagaat
ctcgcccgatgggcccgggcagacccgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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