KEGG   Streptococcus pneumoniae TCH8431/19A (serotype 19A): HMPREF0837_12230
Entry
HMPREF0837_12230  CDS       T01259                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
snc  Streptococcus pneumoniae TCH8431/19A (serotype 19A)
Pathway
snc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:snc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HMPREF0837_12230 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:snc03021]
    HMPREF0837_12230 (rpoB)
   03400 DNA repair and recombination proteins [BR:snc03400]
    HMPREF0837_12230 (rpoB)
Enzymes [BR:snc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HMPREF0837_12230 (rpoB)
Transcription machinery [BR:snc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HMPREF0837_12230 (rpoB)
DNA repair and recombination proteins [BR:snc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HMPREF0837_12230 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23 NusG_add
Other DBs
NCBI-ProteinID: ADI70458
Position
complement(2039916..2043527)
AA seq 1203 aa
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKAFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELESDSKDIT
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTVEKDIHKNPMDSRTDEALKE
IYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAEPLV
DPETGEILVEAGTIMTRSVIESIESHLDGDLNKIVYIPNDAAVVTEPVVLQKFKVVAPTD
PDRVVTIIGNANPDDKVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRH
QGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAP
YVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAY
NQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDQEVELRDLDEGMDEDVIHVDDLEKAREKAAQEAKAAFEAEEAEKATKAEATEEAA
EQE
NT seq 3612 nt   +upstreamnt  +downstreamnt
ttggcaggacatgacgttcaatacgggaaacatcgtacccgtcgtagtttttcaagaatc
aaagaagttcttgacttaccaaatttgattgaaattcaaactgactcattcaaagctttc
ctagaccacggtcttaaggaagtgtttgaagatgtattgccaatttcaaacttcacagac
acaatggagttggaatttgttggatatgaaatcaaggaaccaaaatacacgctagaagaa
gctcgtatccacgatgctagctactcagcaccaatttttgtaaccttccgtttgatcaat
aaagaaacaggcgaaatcaagacccaagaagttttctttggtgatttcccaatcatgaca
gaaatgggtactttcatcatcaatggtggtgaacgtattatcgtttctcagttggtccgc
tcaccaggtgtttactttaacgacaaagtagacaaaaatggtaaggtgggctatggttca
actgttatccctaaccgtggagcttggttggaacttgaaagcgactcaaaagatatcacc
tacactcgtatcgaccgtactcgtaagattccatttacaaccttggttcgtgctcttggt
ttctcaggtgatgatgaaatctttgatatctttggtgacagcgaattggttcgcaacact
gttgaaaaagatatccacaaaaatccaatggactctcgtacagacgaagccttgaaagaa
atttacgaacgccttcgtccaggtgagcctaagacagctgaaagctcacgtagcttgctt
gtggctcgcttctttgacccacgtcgctatgacttggcagcagttggtcgttacaaaatc
aataaaaaactcaatgttaaaacacgtttgctcaaccaaaccattgcagagccattggta
gaccctgaaactggagaaatcttggtagaagctggtacgattatgactcgtagcgtgatt
gaaagcattgaaagccatttggatggcgacttgaacaagattgtctacatcccaaacgat
gcagccgttgtgactgagcctgttgttcttcaaaaattcaaggttgttgctccaactgat
ccagatcgcgtcgtaacgatcattggtaatgctaacccagatgacaaggttcgtacggtg
actcctgcagatatccttgctgagatgagctacttcctcaacttggctgaaggacttggc
cgtgtagatgatatcgaccaccttggaaatcgtcgtatccgtgcggttggtgaattgctt
gccaaccaagtacgtttgggactttctcgtatggaacgtaatgtccgtgaacgtatgtct
gttcaggacaatgaagtcttgacaccacaacaaattatcaatatccgtcctgtaacagct
gcagttaaagaattctttggttcatcacagttgtcacagttcatggaccaacacaacccg
ctttctgagttgtctcacaaacgccgtttgtcagccttaggacctggtggtttgactcgt
gaccgtgctggatatgaagtacgtgacgtgcactacactcactatggtcgtatgtgtcca
atcgagacacctgaaggacctaacatcggtttgatcaataacttgtcatcttacggacac
ttgaacaaatatggttttgttcaaacaccataccgtaaggttgaccgtgaaacaggtgtt
gtcacgaacgaaattgtttggttgacagctgatgaagaagatgaatatactgtagctcag
gctaactctcgtctgaatgaagatggaacctttgctgagaagattgtcatgggacgtcac
caaggggtcaaccaagagtatccagctaatattgttgactacatggacgtttcaccaaaa
caggtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggagccaatatgcaacgtcaggctgtgccattgattaatcctcaggcacct
tacgttggtactggtatggaataccaagcagcccacgattctggtgcggctgtgattgct
cagtatgatggtaaagttacttacgcagatgctgacaaggtagaagttcgtcgtgaagat
ggatcattggatgtttaccacatccaaaaattccgtcgttcaaactcaggtactgcttac
aaccaacgcactctcgtaaaagttggtgatgtcgttgaaaaaggcgatttcatcgctgac
ggaccttctatggaaaatggagaaatggcgcttggacaaaacccaatcgttgcctacatg
acttgggaaggttacaacttcgaggatgccgttatcatgagcgaacgcttggtgaaggac
gatgtctacacatctgttcaccttgaagaatacgaatcagaaacgcgcgatacaaagctt
gggcctgaagaaatcactcgcgaaattccaaacgttggtgaagatgccctcaaagacctt
gacgaaatggggattatccgtattggtgctgaggttaaagaaggtgatattcttgtaggt
aaagtaacacctaagggtgagaaagatctttcagctgaagaacgtctcttgcacgctatc
tttggagacaagtctcgtgaagtgcgtgatacttctcttcgtgtaccacacggtgccgat
ggtgtcgttcgtgatgttaagatctttacacgtgtaaatggagatgagttgcaatcaggt
gttaacatgttggttcgtgtttacatcgctcaaaaacgtaagattaaggtcggagataaa
atggccggacgtcacggaaacaaaggggttgtctctcgtatcgttcctgtagaagacatg
ccttaccttccagacggaactccagtcgacatcatgttgaacccacttggggtgccatca
cgtatgaatatcggtcaggttatggagcttcaccttggtatggcagctcgtactcttggt
attcacattgcgacaccagtctttgatggagcaagttctgaagatctttggtcaactgtt
aaagaagcaggtatggatagcgatgccaaaacgatcctttacgatggacgtactggtgaa
ccatttgataaccgtgtttctgttggagtcatgtacatgatcaaactccaccacatggtt
gacgataaattgcacgcgcgttcagtcggaccttactcaactgttacccaacaaccactc
ggaggtaaagctcagtttggtggacaacgtttcggtgagatggaggtttgggctcttgaa
gcctacggtgcgtcaaatgtccttcaagaaatcttgacttacaagtctgacgatatcaac
ggacgtttgaaagcctatgaagctattacaaaaggcaaaccaattccaaaaccaggtgtt
ccagaatccttccgagttcttgtcaaagaattgcaatctcttggtcttgacatgcgtgtc
ctagacgaagatgaccaagaagtggaacttcgcgacttggatgaaggaatggacgaagat
gtcatccacgtagatgaccttgaaaaagcccgcgaaaaagcagcccaagaggctaaagca
gcctttgaagctgaagaagctgagaaagcaacaaaagcggaagcaacagaagaagctgct
gaacaagaataa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (10)   

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