KEGG   Sulfuriferula nivalis: SFSGTM_05690
Entry
SFSGTM_05690      CDS       T06628                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sniv  Sulfuriferula nivalis
Pathway
sniv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sniv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SFSGTM_05690 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sniv03021]
    SFSGTM_05690 (rpoB)
   03400 DNA repair and recombination proteins [BR:sniv03400]
    SFSGTM_05690 (rpoB)
Enzymes [BR:sniv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SFSGTM_05690 (rpoB)
Transcription machinery [BR:sniv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SFSGTM_05690 (rpoB)
DNA repair and recombination proteins [BR:sniv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SFSGTM_05690 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DUF2023
Other DBs
NCBI-ProteinID: BBO99860
UniProt: A0A809RM41
Position
551266..555339
AA seq 1357 aa
MSYSFTEKKRIRKSFAKRANILQVPFLLATQLESFRAFLQEDVDPATRINDGLQAAFTSI
FPIVSHSGNAKLDFVSYVLGEPAFDMVECQQRGLTYASPLRAKVRLTIMDREASKPTIKE
VKEQEVYMGEMPLMTPTGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDVKDYLYFRIDRRRKMPVTTLLKSLGYSNEQILAEFFTTDVFHLSNQL
IRFELVPDRLRGEIARFDIIDKDGAVIVAKDKRITVKHIRMMQEAGLQQIAVPTDFILGR
VLGTNVVDTATGEVVAHANDEITDVLLAKLQEANIASVKTLYVNELDQGAFISATLRTDE
TQDQYAARVAIYRMMRPGEPPTEDSVEALFNSLFFSEDRYDLSAVGRMKFNRRIGREELV
GSGVLSTEDIVSVIKILVELRNGRGEIDDIDHLGNRRIRSVGELAENQFRAGLVRVERAV
KERLSQAESDNLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAKTNEYGFLETPYRKVI
DSKVTDQIDYLSAIEEGKYVIAQANAEMDAEGRFTSEIVSCRSKNEFELAAPDTIDYMDV
APSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKSLVGTGIERTAAVDSGTT
VQAKRGGVVDYVDAGRIVVRVNDDETKAGEVGVDIYTLIKYTRSNQNTNINQRPLVNVGD
KLMRGDVIADGASTDMGELALGQNLLVAFMPWNGFNYEDSILISEKVVADDRYTSIHIEE
LTVVARDTKLGPEEITRDISNLSERMLNRLDDSGICFIGAEVEAGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMAGIVIDVQVFTREGIERDARAKQIIEDQLAG
YKKDMADRMRIVENDTFARLQRLITGKLAKGGPKKLAKDTAVDLAYLESISRYDWFDIRL
ADDEASRQMESLKDSLDQKRIEFDAMFEEKKKKLTAGDELQAGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVVSKIVPIEDMPFTADGTPMDIVLNPLGVPSRMNVGQILETHLGWAAK
GLGKKIDAMLQAQKEVSEVREFIGKIYNSTGHKEDIDSFTDHEVIELAKNLRQGVPFATP
VFDGASEEEIKDMLELADLPRSGQITLFDGRTGEAFDRKVTVGYMHVLKLHHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQEMLTVKSDDVNGRTKVY
ENIVKGEHKIEAGMPESFNVLVKEIRSLAIDIDLERY
NT seq 4074 nt   +upstreamnt  +downstreamnt
atgagctactcattcaccgagaaaaaacgtatccgtaaaagctttgcaaaacgagcaaat
atattacaggtgcctttcttgttggcaacacaacttgaatcattccgcgcttttttgcaa
gaagatgttgatcctgcaacgcgtattaatgatggtttacaggcagcatttacctcaatc
tttcctatcgttagccactctggtaacgccaaattagactttgtgagctacgtactaggt
gagcctgcttttgacatggttgaatgtcaacagcgcggcttaacctatgcatctccattg
cgagcaaaagtccgcttgacgataatggatcgtgaagcttctaagcctactattaaagaa
gtaaaagagcaggaagtctacatgggtgaaatgcctttgatgacacctactggctctttc
atcattaatggtactgaacgcgtaatcgtttctcagttgcatcgttcgccaggtgtgttc
tttgagcatgatcgcggtaaaacgcatagctcaggcaagttgttgttctctgctcggatt
attccatatcgtggctcatggctggattttgaattcgacgtaaaagattacctatacttc
cgtatcgatcgtcgtcgtaagatgccagttactacattgctgaagtcactgggttacagc
aatgaacaaatacttgcagaatttttcactactgacgtattccatttaagcaatcagctg
attcgctttgaattagtgcctgatcgtttgcgtggcgagattgctcggttcgacattatt
gataaagatggtgcggttattgttgctaaagataagcgcatcacagtcaagcatatacgc
atgatgcaagaagctgggttacagcagattgctgtgccaactgactttattctgggccgt
gtactaggcactaatgttgtcgatacagcaacaggcgaagtggttgcgcatgcaaatgat
gaaatcactgatgtattgttagctaagttgcaagaagcgaatattgcttcagttaaaact
ctgtatgtgaatgagctagatcagggtgcatttatctcggcgactttacgtacagatgaa
acacaagatcagtatgctgctcgtgttgcgatttatcgcatgatgcgtcctggtgagcct
cctactgaggactctgtagaagcgctatttaattcactattctttagtgaagatcgctat
gacttgtcagccgtcggtcgtatgaagtttaaccgccgtatcggtcgtgaagaattggtt
ggtagtggtgtgttatctactgaagatatcgtttcagtgattaaaatattagttgagctg
cgcaatggccgcggtgagattgatgatattgatcacttaggtaatcgacgtattcgtagt
gttggcgagttggcagagaatcaattccgtgctggtttagttcgtgttgagcgtgctgtt
aaagagcgtttgtcacaagctgagtctgataacctgatgccgcatgatttgatcaatgcg
aagcctgtttctgcagctatcaaggaattctttggttccagccagttgtcgcaatttatg
gatcaaaccaatccgctgtctgagattacgcataagcgtcgtgtttcagctttaggaccc
ggtggtttgacacgtgaacgcgcaggtttcgaagtccgtgacgtacatcctactcactat
ggtcgcgtctgtccgattgaaacgcctgaagggccaaatatcggtttgatcaattcattg
gctttgtatgctaaaactaacgaatacggtttcctggaaaccccttatcgtaaagtaata
gattcaaaagtaaccgatcagattgattatctgtcagcgattgaagagggcaagtatgtt
atcgctcaggccaatgctgaaatggatgccgaaggtcgtttcaccagcgaaatcgtttca
tgtcgttctaagaatgaatttgagttggcagcacctgacaccattgattatatggacgtc
gcaccttcacaaattgtatctgttgcggcttcattgattcctttcctggaacacgatgac
gcgaaccgcgcattgatgggttctaacatgcaacgtcaggctgtaccttgtttgcgtgct
gaaaaatcattggtaggtacgggtattgaacgtactgctgcagtcgactcaggaacgaca
gttcaagctaagcgtggtggtgtggttgattacgttgatgctggtcgtattgttgttcgt
gtaaacgacgatgaaaccaaggcaggtgaagttggtgtggatatttacacactgatcaag
tacacacgctctaaccaaaacacaaatatcaaccagcgtccgttggtgaatgttggtgat
aagctgatgcgtggcgatgtgatagctgatggcgcgtctaccgatatgggtgaattagcc
ttaggtcagaacttgctcgtggcatttatgccatggaacggtttcaactatgaagattcg
attttgatatctgaaaaagttgttgctgatgatcgttatacttcaatacatattgaagaa
ttaacagttgtcgcgcgtgataccaagctcggacctgaagaaattacccgtgatatatca
aatctatccgagcgcatgttaaaccgtttggatgattctggtatttgctttattggtgct
gaagtcgaggctggtgatgttctggttggtaaggtgacacctaaaggtgaaactcaactg
acaccagaagaaaaattgctgcgtgctattttcggtgaaaaagcatcagacgtgaaagat
acgtccttgcgtgtgccttcaggcatggctggtatagtaattgatgtgcaagtgttcacg
cgcgaaggtatcgagcgtgatgcacgtgcgaaacagattattgaagaccaattagccgga
tataaaaaggacatggctgaccgtatgcgtatcgttgaaaacgatacctttgcgcgtttg
caacgtttaattaccggtaagcttgctaaaggcggtccgaaaaaacttgcaaaagatacc
gctgttgatcttgcatacctggaaagcataagtcgctatgactggttcgatattcgcttg
gctgatgacgaagcaagtcgccaaatggaatcacttaaagacagtctcgaccagaaacgt
atcgagtttgatgcgatgtttgaagagaagaaaaagaaattgaccgctggtgatgaattg
caagcgggtgtgcagaagatggttaaagtctatgttgcagttaaacgtcgtctgcaacct
ggtgacaaaatggcgggtcgtcacggtaacaaaggtgttgtttccaaaattgttccgatt
gaagatatgccgttcaccgcagatggtacaccgatggatatcgtcttgaatccattgggt
gtgccttcacgtatgaacgttggtcagattctggaaacgcatttgggctgggctgccaaa
gggcttggtaagaaaattgatgccatgttgcaagcgcagaaggaagtttctgaagtgcgt
gaattcatcggtaagatttacaattctactggtcacaaggaagatattgatagtttcacg
gatcatgaagttatcgaattagccaaaaacttgcgccaaggtgtgcctttcgcaacccca
gtgtttgatggtgcttctgaagaagaaatcaaagacatgctggagttggctgatttaccg
cgcagtggacaaatcaccctgtttgatggtcgtactggtgaagcgttcgatcgtaaggta
accgttggttacatgcacgtattgaaactgcatcacttggtcgatgataagatgcatgct
cgttcaactggaccgtacagcttggttacgcaacagccgttaggtggtaaagcgcaattc
ggtggtcaacgtttcggtgagatggaggtatgggcactggaagcttatggcgcatcgtac
atcttgcaggaaatgttgacggttaaatctgatgacgtgaatggtcgtaccaaagtgtat
gaaaacatcgttaaaggtgaacacaagattgaagcaggtatgcctgaatctttcaacgtg
ctagtgaaagaaatccgttccttggcaattgatattgatctcgagcgttattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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