KEGG   Sphingomonas sp. NIC1: A7E77_08740
Entry
A7E77_08740       CDS       T04479                                 
Name
(GenBank) RNA polymerase subunit sigma-70
  KO
K02405  RNA polymerase sigma factor FliA
Organism
snj  Sphingomonas sp. NIC1
Pathway
snj02020  Two-component system
snj02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:snj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A7E77_08740
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    A7E77_08740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:snj03021]
    A7E77_08740
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:snj02035]
    A7E77_08740
Transcription machinery [BR:snj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A7E77_08740
Bacterial motility proteins [BR:snj02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    A7E77_08740
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 Sigma70_ECF
Other DBs
NCBI-ProteinID: ANC88381
Position
complement(1808985..1809707)
AA seq 240 aa
MVPQGPLTYSPRQRPGGDSEALIRQHLPMVRRIAWHVHGSMSTIVDVEDLVQIGLVALVE
AVGQAAEQGAQFKAYLQTRLRGAMIDELRRQATTTRGAMRRRRQYQAAIAAVTARTGRAP
DEATLAAELGVTIERLRAEYETADTVRFESMDEVYADDLPWFADDTPDAFEQLAESDLRD
TLIAAIGALPEREALVIQLYYVEELNLEEIGQVLGVGSARVCQIKAAAHAKLKKALARKI
NT seq 723 nt   +upstreamnt  +downstreamnt
atggtgccgcagggccccctcacctattcgcctcgccagcgtcccggcggcgacagcgag
gcgctgatccgccagcatctgcccatggtccgccgcatcgcctggcacgtccacggatcg
atgagcacgatcgtcgatgtcgaggacctcgtgcagatcggcctcgtcgctttggtcgag
gcggtgggtcaggcggcggaacagggcgcgcagttcaaggcctatctgcaaacccggctg
cgcggcgcgatgatcgacgaactccggcgacaggcgacgacgacgcgcggcgcgatgcgg
cggcgccggcaatatcaggccgccattgccgccgtcacggcacgaaccggccgcgcgccc
gacgaagcgacgctcgccgccgaactcggcgtcacgatcgaacggctgcgcgcagagtat
gagaccgccgacacggtgcggttcgaatcgatggacgaagtctatgccgacgacctgccc
tggttcgccgacgacacgcccgacgccttcgaacagctcgccgaaagcgacctgcgcgac
acgctgatcgccgcgatcggcgctttgcccgaacgcgaggcgctggtgatccagctctat
tacgtcgaggaattgaacctggaggaaatcggccaggtgctcggcgtcggctcggcaaga
gtgtgccagatcaaagccgccgcgcatgcgaagctgaagaaggcgctggcaaggaagatc
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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