KEGG T04479: A7E77

Sphingomonas sp. NIC1: A7E77_10335

Entry

A7E77_10335       CDS       T04479

Name

(GenBank) tRNA pseudouridine(55) synthase TruB

K03177

tRNA pseudouridine55 synthase [EC:5.4.99.25]

Organism

snj Sphingomonas sp. NIC1

Brite

KEGG Orthology (KO) [BR:snj00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:snj03016]
    A7E77_10335
Enzymes [BR:snj01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     A7E77_10335
Transfer RNA biogenesis [BR:snj03016]
Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    A7E77_10335
Prokaryotic type
    A7E77_10335

SSDB

Motif

Pfam:

TruB_N TruB_C_2 TruB_C

Other DBs

NCBI-ProteinID:

ANC87261

Position

complement(2170769..2171776)

AA seq 335 aa
MHGWIIVDKPLGLGSTQVVSAVKRALRQGGYGKFKVGHGGTLDPLATGVLPIAVGEATKL
AGRMLDSDKVYDFTIRFGEQTDTLDAEGVGVATSDVRPTLADVEAVLPRFTGPISQVPPA
YSALKVDGERAYDLARAGEDVVLASRDVTVHALHSSPARGRWQRDALTEGEDTANVPSAD
TPPPPLTCGERSPSPADAREELDEITLTAHVSKGTYIRSLARDIALALGTVGHVTMLRRT
KAGPFTLAPAISLDNLAEAGMGRTLEQILLPLRAGLDDIPALPLTPDQAGALRQGRVLTG
IATDDGPYFACDGDTPVALVSVEDQQVRVVRGFNL

NT seq 1008 nt +upstreamnt +downstreamnt
atgcacggctggatcatcgtcgacaagccgttggggctcggcagcacgcaggtcgtctcc
gcggtgaagcgtgcgctgcgccagggcggctatggcaagttcaaggtcggccatggcggc
acgctcgatccgctcgcgacgggcgtgctgccgatcgcggtcggcgaggcgacgaagctg
gcggggcggatgctcgacagcgacaaagtgtacgacttcaccatccgcttcggcgagcag
accgatacgctggatgcggaaggcgtgggtgtcgcgacgtcggacgtgcggccgacgctg
gccgacgtggaggcggtgctgccgcgcttcacaggcccgatcagccaggtgccgccggca
tacagcgcgctgaaggtcgacggcgagcgggcctatgatctggcgcgcgccggcgaggat
gtggtgctcgcgagccgggacgtgacggtgcatgccctccattcttcccccgccaggggg
aggtggcagcgcgacgcgctgacggagggggaggatacggcgaacgtcccgtctgcggac
acgccccctccaccactcacctgcggcgagcggtccccctcccccgctgacgcgagggag
gaattggacgagatcaccctcaccgcccacgtctccaaaggcacctatatccgctccctc
gcccgcgacatcgcactcgcgctcggtacggtcggccacgtcaccatgctccgccgcacc
aaggccggccccttcaccctcgcccccgcgatatcgctggacaatctggcggaagccggt
atggggcgcacccttgaacagatactcctgccgttgagggcggggctggacgacatcccg
gctctacccctcacccccgatcaggcaggggcgctccgccaggggcgtgttctgaccggg
atcgccacggacgatggcccatacttcgcatgcgacggcgacacgccggtcgcgctggta
tcggtggaggaccaacaggtccgcgtcgtccggggtttcaatctgtga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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