KEGG   Ancylobacter novellus: Snov_3133
Entry
Snov_3133         CDS       T01258                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sno  Ancylobacter novellus
Pathway
sno03030  DNA replication
sno03410  Base excision repair
sno03420  Nucleotide excision repair
sno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Snov_3133
   03410 Base excision repair
    Snov_3133
   03420 Nucleotide excision repair
    Snov_3133
   03430 Mismatch repair
    Snov_3133
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sno03032]
    Snov_3133
   03400 DNA repair and recombination proteins [BR:sno03400]
    Snov_3133
Enzymes [BR:sno01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Snov_3133
DNA replication proteins [BR:sno03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Snov_3133
DNA repair and recombination proteins [BR:sno03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Snov_3133
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Snov_3133
   MMR (mismatch excision repair)
    DNA ligase
     Snov_3133
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Snov_3133
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Bep_C_terminal HALZ zf-NADH-PPase
Other DBs
NCBI-ProteinID: ADH90408
UniProt: D7A7V0
Position
complement(3271960..3274137)
AA seq 725 aa
MSARTPDIDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE
AQFPELKGIDSLSEKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLGLSA
DAEVAFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKGNDV
PGIFEVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLRFFA
YAWGEVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASLGYD
IDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPVAKL
TPITVGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVIPQV
VSVELERRPKDAKPYQFPTICPACGSHAVREDGEAVRRCTGGLICPAQAVERIRHFVSRD
AFDIEGLGEKQVQAFFDWGLVKQPADIFTLEARDSAPDSLTRLKNRDGWGETSAKNLFAA
IAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAEMPGEAYPKGNEAW
AEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPEPMEAVAGGGAVAGKTVVFTG
ALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKARELGVSVLTEDEWLE
LAGAG
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgagcgcgcgcaccccggacatcgacgtcgagaagctgaccgccgacgaggcggccaag
gaacatgcccgcctcggcgacgagatcgccgggcacgaccggcgctactaccaggacgac
gcgccgagcgtctccgacgcggactacgacgcgttgcgccggcgctacgaggcgatcgag
gcacagttccccgagctcaagggcatcgacagcctgtccgagaaggtcggcgcggcgcct
tcgtcgaaattcgccaaggtgcgccaccgcgtgccgatgctctcgctcggcaacgccttc
gccgacgaggaggtggaggaattcgtcgcccgcgtgcggcgcttcctcgggctttccgcc
gacgccgaggtcgccttcaccgccgagccgaagatcgatggcctgtcctgctcgctgcgc
tacgagaacgggcagttcgtgcaggcggcgacgcgcggcgacggcttcgagggcgaggac
gtcaccaacaatgtgcgcaccatcggcgaaatccccgagcggctgaagggcaacgacgtg
cccggcatcttcgaggtacgcggcgaggtctatatgggtcatgccgacttcgccgcgatc
aacgagcggcaatcggcgtcaggcaagccgctcttcgccaatccgcgcaacgcggcggcg
ggcagcctgcgccagctcgatccgaagatcaccgcaagccggccgctgcgcttcttcgcc
tatgcctggggcgaggtggcggatggcgcgctgccttccgatacgcagttcggcgtcatc
gaggcgttctcacgctggggcctgccgaccaatccgctcaccgtgctctgccgctctgcg
caggagttgctggcgcattaccacgccatcgaggagcagcgcgcctcgctcggctacgac
attgacggcgtggtctacaaggtcgacagcctcgccttgcagcagcggctcggcttcgtc
tcgcgctcgccgcgttgggcgctcgcacacaaattcccggcgcagcgcgcgatcacgcag
ctcgagcgcatcgagatccaggtcgggcgtaccggcgcgcttactcctgtcgccaagctg
acgccgatcacggtcggcggcgtcgtggtgtccaacgcctcgctgcacaatgaggactac
atcaagggcattggcggcgatggactgccgatccgtggcaccttcaacgacgagccggtc
gatatacgcgagggcgactgggtggtcatccagcgcgccggcgacgtcatcccgcaagtg
gtgtcggtggagctggagcgccggccgaaggatgcgaagccctaccagtttccgacgatc
tgcccggcctgcggctcgcatgcggtgcgcgaggatggcgaggcggtacgccgctgcacc
ggtgggctcatctgtccggcgcaggccgtggagcgcatccgccacttcgtctcgcgcgac
gccttcgacatagaggggctgggcgagaagcaggtgcaagccttcttcgactgggggctg
gtgaagcagccggcggacatcttcacgctggaggcgcgcgattccgcgcccgactcgctg
acccgcctcaagaatcgcgacggctggggcgagacatcggccaagaacctgttcgccgcc
atcgcggcgcggcgcaaggtgccggtgaaccgcttcctctatgccctcggtatccgccat
atcggcgagaccaacgccaagcggctgatgcgccattacccgaccatcgaggcgctgcgc
gaggcggcgctcgccgccgagatgccgggcgaggcataccctaagggcaacgaggcctgg
gcggagatgaacgccatcgagggcatcggcgccgtggtcgccgaggcggtggtcgacttc
ttccacgagccgaacaacgaggcggcgctcgacgcgctgttgaaggaagtcacgcccgag
ccgatggaagcggtggcgggtggtggcgcggttgccggcaagacggtggtgttcaccggc
gcgctggagaagatgacccgcgacgaggccaaggccatggccgagcggctcggggccaag
gtggcgggctcggtgtcgaagaagaccgactatgtcgtggccggcgccgatgccggctcc
aagctcgccaaggcccgcgagctcggcgtttcggtgctcaccgaggacgagtggctggag
ctggcgggcgccggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (50)   

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