KEGG   Solenopsis invicta (red fire ant): 105198728
Entry
105198728         CDS       T03916                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X1
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
soc  Solenopsis invicta (red fire ant)
Pathway
soc03018  RNA degradation
soc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:soc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105198728
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105198728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soc03019]
    105198728
   03041 Spliceosome [BR:soc03041]
    105198728
Messenger RNA biogenesis [BR:soc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105198728
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105198728
Spliceosome [BR:soc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105198728
 Complex C
  U2 snRNP components
    105198728
SSDB
Motif
Pfam: LSM TIG_SUH divDNAB CwfJ_C_1
Other DBs
NCBI-GeneID: 105198728
NCBI-ProteinID: XP_011163860
Position
14:complement(11960606..11962286)
AA seq 99 aa
MVEESEQQLPPIDVKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEI
INIVEIDEETYEEIYRQKKRTIQMLFVRGDGVILVSPPT
NT seq 300 nt   +upstreamnt  +downstreamnt
atggtcgaggaatcggagcagcagttgccgccgatagacgtgaaggagccgctggacctc
ataaagctaagtctggaggagcggatttacgtgaagatgaggaacgaaagagaacttcga
ggaaaattgcatgctttcgaccagcatctgaacatggtgctgggcgacgtagaggagatt
ataaacatagtggaaattgacgaggaaacatacgaggagatctatcgccagaaaaagaga
accatccagatgctgtttgttcgtggagatggtgtcatcctggtgtctccgcctacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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