KEGG   Sodalis praecaptivus: Sant_2721
Entry
Sant_2721         CDS       T03004                                 
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
sod  Sodalis praecaptivus
Pathway
sod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sant_2721 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sod03019]
    Sant_2721 (rhlE)
Enzymes [BR:sod01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Sant_2721 (rhlE)
Messenger RNA biogenesis [BR:sod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Sant_2721 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UvrD-helicase AAA_22 P-loop_SecA Gag_p24
Other DBs
NCBI-ProteinID: AHF77749
UniProt: W0HVE3
Position
complement(3156190..3157674)
AA seq 494 aa
MSFDSLGLSAEILRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPIL
QLLEQRPAPAGKQRRPVRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQM
MKLRGGVEVLVATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLPT
KRQSLMFSATFSDEIKTLANSLLDNPASVEVARRNTASEQITQFVHMVDKKRKRELLSDM
IGRNNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGGIRVL
VATDIAARGLDIDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELGLLRD
IERLLKKPIPRIALPGYDPDPSIKAEPIQQGRGSGRGGATRGGRGAPAGDGARDSRSGPR
RDGAQPRRSASGRGAASGNGGARSGGASGNGGARSGGASGNGGARSGGASGNGGARSGRG
GNYAGNGGTRSGNR
NT seq 1485 nt   +upstreamnt  +downstreamnt
atgtcatttgattcacttggcctgagtgccgagattttgcgcgcattagcggaaaagggc
tatctcgaaccgacgccggttcagcaacaagccatcccttatgtattacaaggccgcgat
atcatggccagtgcccagaccggcacaggcaaaaccgccgcctttaccttaccgatactg
caactgctcgagcagcgcccggcgccggccggtaaacagcgccggcctgtacgggcgctt
attttgacgcccacccgtgagctggcggcgcagatcggcgaaaacattaccgagtacagc
gcccatctcggcctgcgctcgctggtggtgttcggcggcgtcagcatcaacccgcagatg
atgaagctgcgcggcggcgtggaagtgctggtggcgacccccgggcgcctgttggatctg
gctcagcagcgcgcggtcgatctttcccaggtggaaatcctggtgctggatgaggccgac
cgcatgctggatatgggctttattcacgatatccgccgggtgatgaagctgctgccgaca
aaacgtcagagtctgatgttttccgccaccttctccgatgagattaaaacgctggcgaac
agcctgctggataatccggcgtcggttgaggtcgcgcggcgcaataccgcgtccgagcaa
ataacccagtttgtgcacatggtcgataaaaagcgcaagcgcgagctgctctccgacatg
atcggtcggaacaactggcagcaggtgctggtgtttacccgtaccaagcacggcgctaac
cacctggcggagcagcttaacaaggacggcatcactgccgccgccatccacggtaataag
agccagggcgcacgtacccgggcgctggcggatttcaagcagggcggcatccgcgtcctg
gtggcgaccgatattgccgcccgcggtctggatatcgatctgctgccgcacgtggtgaac
tatgagttgcctcaggtggcggaagattatgtccatcgcatcgggcgcaccggccgcgcg
gcggccaccggcgaagcgctgtcgctggtgtgtgtcgatgagctgggcctgctgcgcgat
atcgagcgtttgctgaaaaagccgatcccgcgtatcgcgttaccgggctatgatccagac
cctagcatcaaagccgagcccatccaacaggggcggggtagcggtcgcggcggcgcgacc
cgcggcggccgtggcgcacccgccggtgatggcgcgcgcgatagccgttccggcccgcgc
cgcgatggcgcgcagcctcgccgcagcgcatccggccgcggtgctgcctccggcaacggt
ggtgcccgcagcggcggcgcttccggcaacggcggtgcccgcagcggcggcgcttccggc
aacggcggtgcccgcagcggtggtgcttccggtaacggcggtgcccgcagcggccgtggc
ggcaattatgccggtaacggcggcacccgcagcggtaatcgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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