KEGG   Spinacia oleracea (spinach): 110788758
Entry
110788758         CDS       T05137                                 
Name
(RefSeq) THO complex subunit 4B-like isoform X1
  KO
K12881  THO complex subunit 4
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03013  Nucleocytoplasmic transport
soe03015  mRNA surveillance pathway
soe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110788758
  09122 Translation
   03013 Nucleocytoplasmic transport
    110788758
   03015 mRNA surveillance pathway
    110788758
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110788758
   03041 Spliceosome [BR:soe03041]
    110788758
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110788758
    TREX complex
     110788758
Spliceosome [BR:soe03041]
 Complex C
  Other components
   EJC/TREX
    110788758
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110788758
SSDB
Motif
Pfam: RRM_1 FoP_duplication DUF5549
Other DBs
NCBI-GeneID: 110788758
NCBI-ProteinID: XP_021849093
UniProt: A0A9R0IHH5
Position
6:complement(109315008..109318581)
AA seq 251 aa
MAMENRLNMSLDDLIKVNKTSTGRGGGGGGRGRPGGRGNSGAAPSRRFTNRVSNRSTPYT
MPMSKAPDSFWQHDMFGNQGGVGVGGGGGASSIETGTKLYISNLDYGVSNDDIKELFSEV
GDLKRYAVHYDRSGRSKGTAEVVFSRRGDGLAAVKRYNNVELDGKPMKIEIVGTNVATAG
ILPPVLNGIGRNPLGPRSVQGRGGAMGRIRGGRGFGRGRGRGRGRDEKASVSVDDLDADL
DKYHSEAMQTN
NT seq 756 nt   +upstreamnt  +downstreamnt
atggctatggaaaaccgcttaaacatgtccctcgacgatctcatcaaggttaacaaaacc
tctactggccgtggcggaggcggtggcggtagaggcagacctggcggcagaggtaattcc
ggtgccgcaccttctcgaagattcactaatcgcgtctccaatcgctccactccttatact
atgcccatgtccaaggcgcctgattcgttttggcagcatgatatgttcgggaatcaaggt
ggtgttggcgttggtggaggaggaggagcgtcttcaattgagactggaacgaagctttac
atctctaatttggattacggtgtttcaaatgatgacatcaaggagctcttctcagaggtt
ggtgacctgaaacgttatgctgtccattatgataggagtggaagatcaaagggaactgcc
gaagttgttttctcacggagaggagatggtctggctgctgtcaagaggtataataatgta
gaacttgatggtaagccaatgaaaatcgagattgtggggacgaatgtcgcaaccgcggga
atattgcctccagttcttaacggcattggcaggaatccacttggcccaagaagtgtacaa
ggaagaggtggtgctatgggacgcatacgtggaggccgtggttttggcagaggtcgtggc
aggggaagagggcgtgatgaaaaggcatctgtatctgtagatgacctggatgccgacctg
gacaagtaccactcagaagcaatgcagacaaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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