KEGG   Spinacia oleracea (spinach): 110793119
Entry
110793119         CDS       T05137                                 
Name
(RefSeq) flowering time control protein FY isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110793119
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110793119
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     110793119
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 WD40_like WDR54 PROPPIN Coatomer_WDAD
Other DBs
NCBI-GeneID: 110793119
NCBI-ProteinID: XP_021853653
UniProt: A0A9R0IRF4
Position
1:66641514..66661376
AA seq 745 aa
MMYGESPQQQQQQQQHHQQHHQQQHQPQQPGPPPHHMQHAPPPHMHPPPQYQHPPPPPQH
QQPLPGMEFHRGPPPPPPPTMMRQPSASSTNLPPPPDFHHPQQPPYDSHADSYAAKRMRK
LTQRRAVDYTSTIVRYLQVRMWQRDSRDRTILQPTPAAAVDLLPPAAYSDNPSTSFAAKF
VHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWNGQSFNFEMILQAHEQAVRSMVWS
HNENWMVTGDDGGSIKYWQNNMNNVKVNKSAHKESVRDLSFCRTDLKFCSCSDDTSVKVW
DFARCQEETSLTGHGWDVKTVDWHPTKSLLVSGGKDNLVKLWDAKTGKELCSFHGHKNTV
LSVKWNDNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSY
DGSIFHWLVGHETPQIEVPNAHDNAVWDLAWHPAGYILCSGSNDHTTKFWCRNRPGDTGR
DKFNVGYNQGYGEQNPAFANRAGGNFSFQEPPTMPGSFPPGLARNEGTIPGVGAAMPLSI
PGVDNSSHGEQKQTHPPPLPPGPHPSMMPPNQPQYQHNPQQMPSFPQPPPNMPQLQPPSH
MPLHQHHHIHRPPPQMSPQMPGSMPMPPTSVPMPMPGPMGMQNATNQMVPQMQQGHFMGM
NPMQPGPIPSGGMPPSGGFSNGMPNMQGPQSTSGQQMYPPAGTFNRPQGGQMPMMPGLGP
YQLSNQSGMPQPPLPPGPPPQQTQQ
NT seq 2238 nt   +upstreamnt  +downstreamnt
atgatgtacggagaatctcctcaacaacagcagcagcagcagcaacaccaccaacaacac
caccaacagcaacaccaaccacagcagccggggcctccgccgcaccacatgcagcacgca
ccaccgccacatatgcatcctccgccgcagtaccagcatccgccacctcctccgcagcat
caacagcctcttccgggaatggagtttcaccgtggaccaccaccacctcctccgccaaca
atgatgcgacagccttctgcttcttcgactaatctccctcctcctcccgattttcaccat
cctcagcaacctccttacgactctcatgctgatagctatgctgccaaaagaatgagaaag
ctcacgcaaagacgagctgtggactatacaagcacaattgtccgatatcttcaggttcgc
atgtggcagcgtgattcaagagaccgaacaatattacaacctactcctgccgctgctgtt
gacttgttgccaccagctgcatattcggataacccatcaacaagctttgcagcgaaattt
gttcacacatctctgaacaaaaatcgatgctctattaatcgtgttctgtggacacccaat
ggaaggcgtctaatcacaggttcacaaagtggtgaatttactctttggaatgggcagtca
ttcaactttgagatgatccttcaggctcatgaacaagcagtcaggtctatggtatggagt
cataatgagaattggatggtcactggggatgatggaggctccataaagtattggcagaac
aatatgaacaatgtcaaggtcaacaaatctgctcacaaagaatctgtacgggatctgagc
ttctgccggacagacctaaaattctgctcttgctctgatgacacttctgtaaaagtttgg
gattttgccaggtgtcaagaggagacatcattaacaggccatggttgggatgtgaagact
gttgattggcaccctacaaagtctttactagtctcaggtggtaaagataaccttgtgaaa
ctctgggacgctaagactgggaaggagctctgctcatttcatggtcacaagaacactgtg
ctcagtgtcaaatggaatgacaatggaaattgggtactcactgcttccaaggatcaaata
atcaagctttatgacataagggctatgaaggagcttgaatcatttcgtggccacaggaag
gatgtcactgcactggcgtggcatccgtttcatgaagaatactttgttagtggaagttat
gatggctctattttccattggcttgttgggcatgagactcctcaaattgaagttccaaac
gcccatgataacgctgtgtgggaccttgcttggcatcctgctggatatatattgtgcagt
gggagcaatgatcacacgacaaaattttggtgcagaaataggccaggggatactggtcga
gataagtttaatgttggctacaaccaaggctacggcgaacaaaaccctgcttttgcaaat
cgtgcaggtgggaatttctcttttcaggaacctccgacaatgccaggatcatttccacct
ggattggcacgaaacgagggtacaattccgggtgtaggtgctgcgatgccgctttccatt
cctggcgtggataattcttctcacggagagcagaagcagactcatccacctcctttgcca
ccaggcccacatccttctatgatgcctcctaatcaacctcaatatcaacacaatcctcaa
caaatgccttccttcccccagccacctccaaatatgccccagctacagcctccatctcat
atgcccctccatcaacatcatcatatccatcgtccccctccccaaatgtctcctcaaatg
cctggatctatgccgatgccacctacatcagttccaatgccaatgcctggtccaatggga
atgcagaatgctacaaatcaaatggttccacaaatgcaacaagggcatttcatgggcatg
aaccctatgcagccaggacccatacctagtggtggaatgcctccctctggaggtttctca
aacggcatgccaaatatgcagggcccacaaagtacgagtgggcaacaaatgtatccacct
gcaggaacattcaaccgtccgcaaggtggacaaatgccgatgatgcctgggcttggtcct
tatcagctttctaatcaaagtggtatgccacagcctcctttaccacctggtccccctcca
cagcaaacacaacagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

Download RDF
DBGET integrated database retrieval system