KEGG   Serratia odorifera: NCTC11214_02085
Entry
NCTC11214_02085   CDS       T06612                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sof  Serratia odorifera
Pathway
sof03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NCTC11214_02085 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sof03021]
    NCTC11214_02085 (rpoC)
   03400 DNA repair and recombination proteins [BR:sof03400]
    NCTC11214_02085 (rpoC)
Enzymes [BR:sof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NCTC11214_02085 (rpoC)
Transcription machinery [BR:sof03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NCTC11214_02085 (rpoC)
DNA repair and recombination proteins [BR:sof03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NCTC11214_02085 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: VDZ56403
UniProt: A0A447KQP5
Position
1:1904592..1908818
AA seq 1408 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECELLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEEIKNTEGESVHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRIMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMAAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNAGGTEFLEGEQAEVSRVKIANRQLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRALGETPV
APQVSAEEASANLAELLNAGNLGGNDDQ
NT seq 4227 nt   +upstreamnt  +downstreamnt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggcaagtacaagcgcttgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgaactggcttccccgactgcgcacatctggttcctgaaatcactg
ccatcgcgcattggtttgctgctggatatgccactgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtgattgaaggcggtatgaccaacctcgagcgccgtcagatcctg
actgaagagcagtatctggacgcgctggaagagtttggtgacgagttcgacgctaaaatg
ggtgccgaagccatccaggccctgttgaaaaacatggatctggaagccgaatgcgaactg
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgcaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccactggttccgttggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtttgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaagcgcgtcgactactccggtcgttcggttatcaccgtcggtccatac
ctgcgtctgcaccagtgtggcctgccgaagaaaatggcgttggagctgttcaaaccgttc
atctacggcaagttggaactgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagccgtcgtttgggatatcctggacgaagtcatccgcgaacacccg
gtactgctgaaccgtgcaccaacgctgcaccgtttgggtatccaggcattcgagccggta
ctgatcgaaggcaaggccatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtctccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgactcgcgactgtgttaacgcc
aagggcgaaggcatggtgctgagcggcccgaaagaagccgagcgtatttaccgcgctggc
ctggcctctctgcatgcgcgcgtcaaagtgcgtatcaccgaagagatcaagaacaccgaa
ggcgagtctgtacaccagacttcgatcatcgacaccaccattggtcgagccatcctgtgg
atgatcgtaccaaaaggtctgccgtattcgatcgttaaccagcctttgggtaagaaagcg
atctccaagatgctgaacacctgttaccgcatcatgggtctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcctacgctgcccgttccggcgcatccgttggt
atcgatgacatggttatcccggcgaaaaaagccgagatcatcgaagaagcggaaaccgaa
gttgccgaaatccaggagcagttccagtctggtctggtaaccgcgggcgaacgctacaac
aaggtgatcgatatctgggctgcggctaacgaacgcgttgccaaggcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggtgaagtggaacagcaggtttccttcaac
agcatctttatgatggccgactccggtgcacgtggttccgccgctcagattcgtcagttg
gccggtatgcgtggcctgatggcgaaaccggacggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggcttggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gtagacgtcgcgcaggatctggttgtcaccgaagacgactgtggcactcacaacggcatc
ctgatgactccggttatcgaaggtggcgatgtgaaagagccgctgcgtgaacgcgttctg
ggtcgtgtaacggcagaagatgtgctcaagccgggtacggcagacatcctggtgccgcgt
aacaccctgctgaacgagaagacctgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtggtgagctgtgaaaccgacttcggcgtgtgcgccaactgctatggt
cgtgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgccgaatccagcattcaggtgaaaaacaagggtagcatcaagctg
agcaatgccaagttcgtgatgaacgcggccggcaagctggtgatcacctcgcgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaggaaagctacaaggtgccttacggt
gccgtgatgggcaaaggtgacggtgcagaagttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccggtaatcagtgaagtgagcggtttcattcgcttcgccgatatg
gttgacggccagaccattactcgccagaccgacgaactgaccggtttgtcttccctggtg
gtactggatagtgcagagcgtaccggtagcggtaaagacctgcgtccggcgctgaagatt
gttgacgccaaaggcgacgacgtactgatcccaggcaccgatatggctgcccagtacttc
ctgccaggcaaggcaattgtacagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattccacaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggatctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatcacgccgctg
gatggcagcgatgcctacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgcggcgacgtggtatccgatggtccagagtcaccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgtcaacgctggtggcaccgagttcctggaaggcgaacaggct
gaagtgtctcgcgtcaagattgccaaccgtcagcttgctgccgaaggcaaaatcgaagcg
acctttacacgtgacctgctgggtatcaccaaggcttccttggcgaccgagtcgttcatc
tctgccgcatcgttccaggaaacgacgcgcgttctcaccgaagcggccgtggccggtaaa
cgtgatgaactgcgtggcctgaaagaaaacgtcatcgttggccgcctgatcccggcgggt
accggttacgcttatcatcaggaccgtatgcgtcgtcgtgctctgggtgaaaccccggtt
gcaccacaggtgagcgcggaagaagcgtcggccaacctggctgaactgctgaatgccggc
aacctgggcggtaacgacgaccaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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