KEGG   Shewanella oneidensis: SO_0380
Entry
SO_0380           CDS       T00099                                 
Symbol
hsdR
Name
(GenBank) type I restriction-modification system restriction endonuclease cleavage subunit HsdR
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
son  Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:son00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:son02048]
    SO_0380 (hsdR)
Enzymes [BR:son01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     SO_0380 (hsdR)
Prokaryotic defense system [BR:son02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   SO_0380 (hsdR)
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1RH-like_C Mtf2
Other DBs
NCBI-ProteinID: AAN53463
UniProt: Q8EJT2
Position
complement(391526..394627)
AA seq 1033 aa
MDQDELHKVELPAIAQLSLLGWQYVAGAKLTPEYHERPYLRDVVLVGRLEAAIKRINPWI
NDENLRKVCRDITHPNFVGLMEYNQAIYQTLVNYLSVEQDVGKGRKGQTVKLIDFDNLAA
NEFICTSQFKVEGVNQNIIPDIVCFINGLPLAVIECKSPYISAPISEGINQLRRYANLRN
SVDDEGAQRLFWYNQLMVSTCRDQAKVGTISSNASHYADWKDAYPFTDTTLSEQNLSQAF
SRNSLDDMQVNDNPALYTATSSNYDAITAVTAQQRLIAGIFSPASFLDILQNFIIFEPVE
GKLIKKVARYQQYRAVNKVIERLKTGQDRKEKSGVVWHTQGSGKSLTMVMLAVKMRRDPV
LKQYKLVFITDRTQLDEQLSSTFRAAQGETIYNAGSVAELKALLKKDSSDLVTAMVQKFL
DLEKELSTNNENEGFINLNPSDKIIVLADEAHRTQFGGLAMTINAALPNAPKIGFTGTPL
LKTQKMDKAFGGYIDEYKINQAVDDGATVRILYEGRQVKTEVAGESLDKLFEAYFGSYSK
EEQREIKQKYGVERAVREAPARIRWVCMDLLEHYRKHIQPDGFKAMIVVGSRHAATIFKK
TLDELGAPPSEVIISGYHNDEAYIAVHTDKTKQKKIIQDFTKPLSENPVAFLIVKDMLLT
GFDAPIAQVMYIDRKLQDHTLMQAIARVNRTYAKKECGFIVDYFGLSNHLIEAMEMFSSD
DVEGTYQSLKDEIPKLKATHTLAISFFRHIKNKDVDSYVLALKEETVRAQFDMAFKRFAK
QMNIVLPDVAAAPFLADMKLLGKVHNSARNQYRDAGLDMTDIGAKVRKLVDEHILSTGVD
PKIPPIDLLAANFKESIRPEKSAESKASEIESAIKHHITVKLEEDPEYYKSLSLRLRDII
EKTAGQWEQQLELLLAMVDTIEIDRRRAAKDAGLSETEFAFYNILTAEVTQTSDIEVIDE
HQLIEIKTITQNLVAMFDEATQIVDFFNKGDEIKRLKKEIKRAVIDASFSNVELISNLQD
RFMELAKHKFNKQ
NT seq 3102 nt   +upstreamnt  +downstreamnt
atggatcaggatgaactacataaggtcgagttacccgctattgcccaattatcgctatta
ggttggcagtacgttgcgggagctaaactcacgcctgaataccatgagagaccctatcta
cgggatgtcgtgctggtgggacggctcgaagccgccattaaaagaattaacccttggatc
aacgatgaaaacctgcgcaaggtttgccgtgatatcacccatccaaactttgtcggcttg
atggaatacaatcaggccatctatcaaaccttagtgaattacctttcagtagagcaagac
gttggtaaagggcgtaaaggccaaaccgttaagttgattgattttgataaccttgcagcc
aatgagtttatctgtacatcacagtttaaagtggaaggcgtaaaccaaaatatcatccct
gatattgtatgctttattaatggcttaccgctggcagtgatcgaatgtaaatccccctac
atttcagcaccaataagcgaagggattaaccaactacgccgatatgccaacctacgcaat
agcgtcgatgatgaaggcgcacagcggcttttttggtataaccagctgatggtatcgacc
tgtcgcgatcaggccaaagtgggcacaattagttccaatgcatcccactatgctgattgg
aaagatgcctatccctttaccgataccacattaagcgaacaaaatttatctcaggctttt
agccgtaatagcctcgacgatatgcaggttaacgataaccctgcactgtacaccgccacc
agctcaaactacgatgcaatcactgcggtaacagcacaacaacgcttgattgcaggtata
ttcagccctgctagctttctcgatatattgcaaaacttcattatatttgagccagtagaa
ggcaagctaatcaagaaggttgcacgttaccagcaatatagagccgtaaataaagtgatt
gagcggcttaaaacaggccaagaccgcaaagagaagtcgggcgtggtatggcatacccaa
ggcagcggcaaatcactaaccatggttatgcttgctgttaaaatgcgccgagatcctgtg
cttaagcaatacaaacttgtgtttattactgatcgtactcagttagatgaacaactatct
agcaccttccgcgctgcccaaggcgaaacaatttataacgcgggttcagttgcggagcta
aaagcactgctgaaaaaagacagctcagatcttgtgaccgcaatggtgcaaaaattctta
gacctagagaaagagctgagtactaacaatgaaaacgaaggttttattaacttaaaccca
agtgacaaaattatcgttcttgccgatgaagcccatagaactcagtttggcggccttgcc
atgaccattaacgctgccctacctaacgctcctaaaattgggtttacaggcacaccacta
ctaaaaacccaaaaaatggataaagcttttgggggctatattgatgaatacaagatcaat
caagcggtggatgatggcgcaacagttcgtattttgtatgaaggccgccaagtaaagacc
gaagttgcaggagagtcattagacaaactgtttgaggcttactttggtagctatagcaaa
gaagaacagcgggagattaaacaaaaatacggtgttgagcgcgccgttcgcgaagcacct
gcccgcattcgctgggtttgcatggacttacttgaacactaccgaaagcacatacaacca
gacggttttaaagccatgatagtggtgggtagtcgccatgcggccaccatatttaaaaag
accttagatgagttaggtgcgccacctagtgaagtgattatctcgggttatcacaacgat
gaagcttatattgctgttcataccgacaagacaaagcaaaagaagattatccaagacttt
actaaaccattatcggaaaaccctgtcgcattcttaatcgtgaaagacatgctactgaca
gggtttgacgcaccgatagcacaggtgatgtacatcgatcgtaaactacaagaccatacg
ctgatgcaggccattgctagagtgaaccgtacctatgcaaagaaagaatgcggctttatt
gtcgattactttggactgtcgaaccaccttatcgaagcgatggaaatgttcagcagtgat
gatgtagaaggcacgtatcaaagccttaaagatgaaattcccaagctaaaagctacacac
accctcgccatttcattttttagacatatcaagaataaagacgttgatagttatgtactg
gcactcaaagaggaaactgttcgagcacagtttgatatggcatttaagcgatttgcaaag
caaatgaacatcgttctgcccgatgttgccgccgcaccatttttagccgatatgaaactg
ttgggcaaagtccataattccgcgcgaaaccagtaccgtgatgctggtttagatatgact
gatatcggcgctaaagtccgtaagctggtggacgaacatattttaagtacaggcgttgat
cccaaaataccgcctattgacctacttgccgcaaattttaaagagagtattcgaccagaa
aaatcggctgaatctaaagcttctgaaattgaaagcgcgattaagcaccatattaccgtc
aagcttgaggaagatcccgagtattacaaatcactcagcctaagactcagagacattatc
gagaagaccgcagggcaatgggaacagcaattagagctgttattggctatggtcgacacg
attgagatcgaccgtcgtagagccgcaaaagatgcaggactttccgaaaccgagtttgcc
ttctacaacatacttactgctgaagtgacccaaacaagcgacattgaagtcatagacgag
caccagttaattgagataaagacaattactcaaaaccttgtcgcaatgtttgatgaagct
acgcagatagtcgacttttttaacaagggggatgagataaagcggttgaaaaaagagata
aaacgcgccgttattgatgcatcatttagtaacgtagagttgatatctaacctgcaagat
agatttatggaattggcaaaacacaagtttaataagcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (98)   
   KEGG ORTHOLOGY (1)   
   RefGene (95)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (109)   

Download RDF
DBGET integrated database retrieval system