KEGG   Shewanella oneidensis: SO_2148
Entry
SO_2148           CDS       T00099                                 
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit RecB
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
son  Shewanella oneidensis
Pathway
son03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:son00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SO_2148 (recB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:son03400]
    SO_2148 (recB)
Enzymes [BR:son01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     SO_2148 (recB)
DNA repair and recombination proteins [BR:son03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SO_2148 (recB)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_11 AAA_25
Other DBs
NCBI-ProteinID: AAN55193
UniProt: Q8EF45
Position
complement(2255683..2259483)
AA seq 1266 aa
MSAPSNNMILPTTSQALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEP
LSCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPEYLAQIIASEFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLSQSVQRFKL
AWPRGRDALLALLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFIAFGHGLPPLKVLEALS
LSELKLNKGGVLPSVSEAPLLDHMEQLATLINAIKPAFLFSAKQGISERFAKQKQLKNVL
TPDDLLTTLAAAMLANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSWIYQTRLGVKAQ
NSTAVEPKARTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRN
LVAGVNHLFAQHPNPFISQSIPFDRVKTPASAAAKQLVESTANSAALRLKLLREGETGLN
KASARQTLAEDTAAEITRLLTEAANGQCHTPKGPLIAKDIAILVRDRNEAAVMKTALSKR
QIGAVFLSRDSVFDTVEAREMALILRALASPKDERALRSALATALLGYSAEQIHAFNQDE
EQRQMLLEQFFALHQIWQKRGIMPALLSLANATHMVARLLQTPSVTATADQDSEEPDEAS
NGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIV
TIHKSKGLEYPVCFIPFVSLARDNRRRPTPMLYHRTDADGAQELVWDIEGTDEGWEQAKQ
ETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGIKSQLHETAIGYLLGVTDAGCDFAR
LHSAAQALLNGVESNAQAISVECVADNIADNKLHTGETQSHTLNARNVTRQYRTPWRVGS
YSGLVKNAPHAKASPGADDEVSAVFGAEPANSLSESSWQDSADVPQLPLLNRFSFERGAN
AGSFMHLVLELIDFTQAKIDLPRELPKAMLQYGIAPEWQTVLQDWYMEILQAPLALMAQD
NQLINPELCLAALVPQHTLVEMEFYLPLNRLKDAELNQLLGQFGYDTALHFDELQGMLKG
FIDLTFEYQGKFYIADYKSNHLGDTIQAYHYGALKQAISDHRYDLQYILYSLALHRYLAM
RLPNYDYDIHIGGCYYLFLRGMSVQYPGFGVYYDKPPKALILALDALFNRSQDESHMSQQ
NTGAMA
NT seq 3801 nt   +upstreamnt  +downstreamnt
atgagtgcaccatcaaacaatatgatacttcctactacatcacaggcgctgccgttagat
ccgctcaccctgccatttggtggtagccgattgatagaggccagtgcgggcacaggtaaa
acctatacgatttcgggcttgtatctgcgactactgcttggggatggcttaagcgaacca
ctgagttgcgaacaaattctggtagtaaccttcaccaatgccgccacagaggaattaagg
gacaggatccgccgccgtatacaagtggcttttaagtgtttcttggggctcgaaattaac
gatccctttgtacaggcgttgtacgataaaaccccagaatctgagcgcgccatcgcccta
agacgcttcgacttggcgctcaaatccctcgacgaagcggccatttttactattcacggt
ttttgccaacggatcttagccgatctcgccttcgaatcctctttactgttcgagtcagat
tttaccttagacgacagcgagtttttgcaccatgcagtgcgcgacttttggcgtgaagcc
tgctatccgctgccggaatatttagcccagattattgccagcgaatttggcgatcccgat
ggcttagtcaagcagcttcgggccttgctcggtgctagtgaagcaaaaccgcttaaaccc
gtgcagccctttgctcgtttggcagaatccttaagccagagtgtgcagcgctttaaactc
gcctggccgcgtggccgcgacgcgctgttagcgttacttcatagcctgccgcttaatggc
cagcgctttggtaaagcgagcgacaattaccccaaactggcggaaatgttcgaccaactg
gacaactttatcgcctttggtcatggcttaccgccgctaaaagtgcttgaggccttgtca
ctctcagaacttaagctcaataaaggcggtgtactcccaagcgtgagcgaggcgccactg
cttgaccatatggagcaattagccacgctgattaacgccattaaacccgcgtttttattc
agtgctaagcaagggatcagcgagcggtttgctaagcaaaaacagcttaaaaatgtgcta
acaccggatgatttgcttaccaccttagctgctgcgatgctggccaatcctgatactttg
cctaaagcggtggcaagtcgcttccctgtggccttaatcgatgaattccaagataccgat
cctttgcaatttgcgattttctcgtggatttatcaaacccgtttgggggttaaagcgcaa
aattcgacagctgtcgaacccaaggctcgcacggatagcaaattaagcctgctgatgatt
ggtgaccccaaacaggcgatttatgctttccgcggcgccgatatttacacttatattgag
gcgcgcaggcaaacccaagcgcactattttctcgacactaactatcgctcgagtcgtaat
ctggtggcaggagtcaatcatctatttgcccagcatcccaatccttttattagccaatcg
attccctttgacagggtaaaaacacccgccagtgcggcggcaaaacagttagtcgaaagt
acagccaatagtgccgctctgcggttaaaactgttacgcgagggcgaaacggggctgaat
aaagccagcgccagacaaacattggccgaagataccgccgccgagattacccgtttactc
acggaggccgccaatggccaatgccatacgccaaaagggccattaattgctaaagatatc
gccattttagtgcgcgatagaaacgaagcggccgtgatgaaaaccgcgctgagcaagcgc
caaattggcgcggtctttttaagccgcgacagcgtatttgataccgttgaagcgcgggaa
atggcgctcattttgcgcgcattggccagtcccaaggatgagcgcgccctgcgcagcgct
ctcgccaccgcgctacttggctatagcgcagagcaaattcatgcctttaaccaagatgaa
gagcagcgccaaatgctgctcgaacagttttttgcgctacatcagatctggcaaaaacgc
ggcattatgccagcgctgctgagcttagccaacgccacccacatggtggcacgcctactg
caaacacccagcgttacagccactgccgaccaagatagcgaagagcccgatgaggcgagt
aatggcgagaggcgactaacagattttcgccacttagccgagctgttgcagcaaaaggcc
actgagattgatggcatcagtgccctactcaattggtatgagcaacaacttattgataat
acagggacagatgagcagcagctgcgccttgagagtgagcaaaatctggtgcaaatcgtg
actattcataaaagtaaagggctggaatacccagtgtgttttatcccctttgttagcctt
gcacgggataatcgccgccgcccgacacccatgctctatcacagaactgatgcggatgga
gcgcaggagctggtatgggatattgaaggcacagacgaaggctgggagcaggcaaagcaa
gaaaccttagccgaagatcttcgcctactttatgtggcactcacccgccctgtgtacctg
tgttatttgtacatcgctaaccatagccgcatgttaaaagccgggatcaaaagccaactg
catgaaaccgctatcggttatcttttaggagtaaccgatgccggctgtgattttgcacgt
ctgcacagtgcagcgcaggcgctgcttaatggtgtagagtcgaatgcgcaagcgatcagc
gtggaatgcgttgctgacaacattgctgataacaagctgcacacgggtgaaacgcaatcc
cacaccttaaatgcccgtaatgtcacccgtcagtatcgcaccccatggcgagtaggcagt
tattctggcttagtcaaaaatgcgccccacgccaaagccagcccgggcgccgatgatgaa
gttagcgcggtatttggcgcagaacccgccaatagcctaagtgaatcctcatggcaagat
agcgctgatgtaccgcagctaccactactcaatcgctttagttttgagcgcggcgccaat
gcggggagttttatgcacttagtgcttgagttaattgattttactcaggccaaaatcgat
ttaccgcgtgagttacctaaagccatgctgcaatatggcatcgcccccgagtggcaaact
gtattgcaagactggtatatggaaatattgcaggcaccgctggcattaatggcgcaggat
aatcagctcatcaatcccgagctatgtctagcagcgctcgtgccacaacacaccttagtg
gagatggagttttacctgcctttaaatcgattaaaagatgctgagcttaatcaactcctc
gggcaatttggttacgatactgcgctacatttcgatgaattacagggtatgctcaagggc
tttatcgacttaacctttgaatatcaaggtaagttttatatcgccgactacaaatcaaac
catttaggcgacacgattcaggcttaccattatggagcgcttaagcaggcgattagcgat
cataggtacgatttgcaatacattctctactccctcgccctgcatcgttatttggcgatg
cgactgccaaactatgactacgatatccatatcggcggctgttattacttatttttacgg
ggaatgtcggttcagtatcccggctttggggtttactacgataagccacctaaggcgctc
attctcgccttagatgcgctatttaaccgcagtcaagatgaaagccatatgagtcaacaa
aatacgggagcgatggcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (55)   

Download RDF
DBGET integrated database retrieval system