KEGG   Shewanella oneidensis: SO_4669
Entry
SO_4669           CDS       T00099                                 

Gene name
polA
Definition
(GenBank) DNA polymerase I PolA
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
son  Shewanella oneidensis
Pathway
son03030  DNA replication
son03410  Base excision repair
son03420  Nucleotide excision repair
son03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:son00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SO_4669 (polA)
   03410 Base excision repair
    SO_4669 (polA)
   03420 Nucleotide excision repair
    SO_4669 (polA)
   03440 Homologous recombination
    SO_4669 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:son03032]
    SO_4669 (polA)
   03400 DNA repair and recombination proteins [BR:son03400]
    SO_4669 (polA)
Enzymes [BR:son01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SO_4669 (polA)
DNA replication proteins [BR:son03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SO_4669 (polA)
DNA repair and recombination proteins [BR:son03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     SO_4669 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SO_4669 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AAN57628
UniProt: Q8E8J5
Position
complement(4865828..4868596)
AA seq 922 aa
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT
IARRASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDNA
DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEILDNKAPATI
ATATTTVETEADTTPSLALETQYDTILTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAE
LVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYDISV
LANAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFN
QISLETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFI
DSMLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAF
AEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAP
MQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAK
AANLDVELLAEAGIGDNWDEAH
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgccgaccatagccaataacccacttgttcttgtggatggatcttcttatttataccgc
gcctattatgcgcctcctcatctgacaaactcaaagggcgaagcaactggggcagtttat
ggcgtagtcaatatgctccgcagtttattgagccgttaccagcctagccatattgccgtg
gtatttgacgctaaaggcaagacatttcgcaatgacttataccaagagtacaaagcgcat
cgcccacccatgcccgatgatttacgctcacaaatcgagccgctacaccgtattattcgc
gccttaggcttgcccctcatttccatacccggcgtagaggcagatgatgtcattggcact
attgctcgccgagcgagccgcgagaatcgcgctgtgctcattagtacgggtgataaagat
atggcgcaattggttgatgaaaatatcacgctaatcaacaccatgacagataccatcatg
gggccagaagaagtcgcagccaaatatggtgtaggcccagacagaattatcgatttctta
gcgctgatgggcgataaggcggataacattcctggtttaccaggtgttggcgaaaaaacc
gctttagccatgctcacgggtgccggaagcgtggctaatctacttgctgaacctgaaaaa
gtctctgaattagcttttaggggctcaaaaacgatggcggcgaagatcatcgataatgct
gacatgctaagactttcctacgaactggccaccattaaaaccgatgtggaacttgagcaa
gattggcatgagcttaccgccaaacccgcagatcgagacgaactgatcaaatgctacggc
gaaatggagtttaagcgctggcttgccgaaattttagataataaagcaccagcaaccata
gcgacggcgactaccacagtagaaaccgaagcagacactacgccaagtctcgcacttgaa
acccaatacgacacgattttgaccgaagctcagcttgatgagtggattgccaagctaaaa
caagcatcactgttcgccgtggataccgagaccacgagccttgactatatggtcgccgaa
ctggttggcatgtccttcgccgtggaagcgggtaaagctgcttacctgcctttagcccac
gattatgttggcgcacctcaacaattagataagcagtttgcgctcgaaaaattacgcccc
attttagaagatgccaagcttaaaaaagtcggtcaaaaccttaaatatgacatcagtgta
ttggccaacgcgggcattacactccaaggtgttgcgtttgacaccatgctcgaatcctat
gtgtttaattctgttgcttcacgccatgatatggacggtttagcactcaaatacctaggc
cataaaaatatcgcctttgaagatattgctggcaaaggagcgaaacagctgacctttaac
caaatttcgttagaaacagctgctccctatgcggcggaagatgcagatattacgctacgc
ctacatcaacacctgtggccaaggctcgaaaaagaagctgaattagcatcggtctttaca
gatatcgaactgccactgatccatattctgtctgatattgagcgccaaggtgtctttatc
gatagcatgttgctcggtcaacagagtgaagaactcgcgcgtaaaatcgatgagcttgaa
actaaagcctatgatattgcaggtgaaaaattcaacttaagctccccaaaacagcttcaa
gtactattttttgaaaagctgggctatccggtcatcaaaaagacacctaagggcgcacca
tccaccgccgaagaagtgctggtcgaattagcattggatttccctctaccaaaggtgatc
ttagagcatcgcagcctaacaaaattaaagagcacgtataccgataagctccccttaatg
gtgaatgcaaaaactggccgagtgcatactagctatcatcaagcgaatgcggcgacgggg
cgtttatcatcgagcgagccaaacctgcaaaatattccgatccgaaccgtagaaggccgt
cgtattcgccaagcctttattgccccagaagggcgtaaaattttagccgctgactattca
cagattgaattgcggatcatggcgcatttatcccaagatgcaggtctacttaacgctttt
gccgaaggtaaagacattcaccgcgccaccgctgccgaagtgtttggcaccgactttgat
agcgtcacctcagaacagcgtcgccgcgctaaggccgttaactttggccttatctatggc
atgtcggcttttggattagcgcgccagctcgacattccgcgcaacgaagcgcaaacctat
atcgacacttacttcgcccgttatccaggagtattaaggtatatggaagaaacgcgagca
agtgcggctgatctcggttacgtatcaacattattcggtcgtcgcctgtatttacccgaa
attcgcgatcgtaatgcaatgcgtcgtcaagctgccgaaagggcggccattaacgcacca
atgcaaggtactgccgcagatatcatcaaaaaagcgatgatcagtattgccgattggatt
aaaactgatacccaaggtgaaatcgccatgatcatgcaagtccacgacgaattagtgttc
gaggtcgatgccgataaagccgagacgctcaaacaaaaagtgtgcgaacttatggctaaa
gcggcaaatctggatgtagaactcctagcagaagcggggattggtgataactgggatgag
gcccactaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (61)   

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