KEGG   Solanum tuberosum (potato): 102580345
Entry
102580345         CDS       T02981                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102580345
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102580345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102580345
   03041 Spliceosome [BR:sot03041]
    102580345
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102580345
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102580345
Spliceosome [BR:sot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102580345
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 102580345
NCBI-ProteinID: XP_006341127
UniProt: M0ZS84
Position
Un
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVVGTLKGYDQLLNLVLDEAVEHLRDADDPLKT
TDQKRSLGLIVCRGTAVMLVAPTDGTDEISNPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctggccgaaaagaaacagttttagatttggcaaaatttgttgacaagggtgtgcaa
gtcaagcttactggtggaagacaagtggtaggaacacttaaaggctatgaccaactactt
aatcttgtcttggatgaagccgtggagcaccttagagatgccgatgatcccctgaagacc
accgatcagaaacgaagtcttggcttaatagtctgcaggggtactgcagtaatgctcgtg
gctccaactgatggtacagacgagatatccaatccttttgtccagccagacggggcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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