KEGG   Solanum tuberosum (potato): 102581626
Entry
102581626         CDS       T02981                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102581626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102581626
Enzymes [BR:sot01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102581626
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102581626
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 102581626
NCBI-ProteinID: XP_006346129
UniProt: M1C0A1
Position
Un
AA seq 715 aa
MKKLCMWKSLSTTRQVSHAPTTVFTTRRRTLSSSSSFDIKNVTKSNFESALKDLRGLLRD
ADFVAVDLEMTGVTSAPWRESFDYDRYDISYLKVKDSAEKFAVVQFGVCPFRWDSHKQSF
IAHPHNFYIFPRQEIPGSNQSREFLCQTTSLDFLAKYQFDFNLCVREGISYLSRSQEKEA
LERISSIYMDESSDSVFGLSEDADFPLVRMADVLFAERMKSTIREWRDSLLSKGSCSSEI
KQISTDPSQRFQMVFFKTRPGLALSDFTSRQLRVIKAVTKKHFKDLAYIRVAGEATSPQQ
LIVYTDSNYDRDLLMKEVKDGLRKEAEMKVESAVGFRHVIDLLSSERKLIVGHNCFLDVA
HMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSIC
PHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGI
DFTLHVLGGDLAKETKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISF
PSIILLWGLPSKLKAREIRAYIAQAFGPNSVSSVYHLDESAVFIQFSKPELVSKFLELKE
TLSRNSDPISVLHPLSNILNGENTHAATYDVYQQICSSSISKKLFADQAEAVGIKHKTVS
SRAERGKKGNQVFDKETDVRMFDEKADDLMSSAYGFSETDRSAESFYLDEVLASK
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgaagaagctgtgtatgtggaaatctttatcaactacgcgccaagtatcccacgctccg
accaccgttttcactacgcgccgccgcacactctcttcatcttcttccttcgatattaag
aatgttaccaaatcaaactttgaatcagctctcaaggacctacgaggtcttctacgggac
gccgatttcgtagctgtagacttggaaatgaccggagtcaccagtgcaccttggagagaa
tcattcgattacgaccggtatgatattagctacctcaaagttaaggactccgccgaaaag
ttcgccgtcgttcagttcggtgtttgtcccttccggtgggattctcacaagcaatccttt
atcgctcatccacacaacttctacatattcccacggcaagaaattcctggtagcaaccaa
tcccgtgagttcctttgccagacaacatcacttgatttcttggcaaaataccagtttgat
ttcaatctgtgcgtacgtgaaggaatctcttatttatccagaagccaagaaaaggaggca
ctggaacgtataagttcaatatacatggatgaatcatcagattccgtgtttggcttgagt
gaagatgcagacttcccactggttaggatggcagatgttctatttgctgagagaatgaag
agcacaataagggaatggcgtgatagtttgttaagtaagggaagctgtagctctgaaatt
aaacaaatatcaactgatccaagtcagagatttcaaatggttttcttcaagacccgtcca
ggccttgcccttagtgattttacttctcgccaactaagggtgattaaagcggtcactaaa
aagcatttcaaagatcttgcctatatccgagtagcaggtgaagcaacatctccacagcaa
ttgattgtctatacagattccaattatgacagagatctactgatgaaagaggtgaaggac
ggccttcgtaaagaagcggaaatgaaggtcgaatctgctgttggatttcgacatgtcatt
gatcttctttcatcagagcgaaagttgattgtcggtcacaattgctttcttgatgtggcg
catatgtacagtaaattcattggtccactaccttcaaccgctgaggattatgtatcttcc
cttcagaagctctttcctaccatagtggacaccaagatactcttgaatgcaaatggtgtt
tttcgacaaactttaaataaaagcaacacctcactatccagagcatttgtctctatctgt
cctcatattgctttaggtatcaaaacgtctagtttggctgatagaccgtgtgtagaagtg
gaggttcaagtagatgaaaaaagatcctcgaactggaactcaggagccaagcatgaagct
ggctatgatgcattcatgactggatgcatttttgcacaggcgtgcaatcatctaggcatt
gatttcactctccatgtgcttggtggggatttagcgaaggagacaaagcttcagaattat
atcaatcgcctttaccttagctgggttagtggtaacgtcattgatctaagtagtgggaaa
tgtacaccagactcctcagcttctagtaacctcaaaagtcggtaccaggatatctcattt
cctagcatcattctgttatggggattgccatctaaactaaaagcaagggagataagagct
tatatagcacaagcctttggcccaaattctgtttcctctgtctaccatttggatgaaagc
gctgtctttattcagtttagcaagccagaactggtttctaagtttctagaattgaaggaa
actctaagtaggaacagtgatccaatttccgtgttgcatcctctttcaaatattctgaac
ggagaaaacactcacgcagctacctacgatgtatatcaacaaatatgcagttcgtccatc
tcaaagaaattatttgcagatcaagctgaagctgttggtatcaagcacaaaacagtgtcg
tccagggcagaacgagggaaaaagggaaaccaggtatttgataaagaaacagatgttagg
atgttcgatgagaaagcagatgatctgatgagttcagcatatggcttctctgaaacagat
cgatcagcggaatctttttacctagatgaagttctggcaagcaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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